Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03508 ATGCGCGCCCCTACCGCCAGAAAACTATGCACTCTCAGCTCCTATTTCCGTTCACATTTACAGAACAATCCCAAAAACCACGTTTCCTCTTTCAAATCATCAATTCCATTTGAAACCCAACACCATTTCGATTCTGACTTGAACCTATCAACCCTCAAACTCCATGGTCCATCTCCCCCAGAGGATATGCCTGAACTGGGTGAGGCCACTACTCAGCTTTCTTCTATATTGTACACTCCTCCCGTAAAGAAACTTGTTGGTGAGAAAGTTGATGATGAAGAAAAAGAGAAAAGCATAGTGGAAATACCACTGATACTAGACTTTGCTCACGGCGATTCTTCAATTAAACGGAAGGAGGTAGCACGGGAGAGGAAACAAAAATGGATTTTTAAAGACACTGGTGGTGAACGATCTGACAGGCTAATCAAAATTTGTGCGAGAAAACTAGGAGCAACTCCTACAGTTGATATGTTTGGCCGCTTGGGTCGAGAAACAGGTCTAAAAGAGTACAATTCATTGATCAGATTGTGCATAAAGAAGGCTAGGGAGACTGATGATGAGTACATTGCTACTGACGAATTGGGCAAGACTTATCACCTTTTAAAATTAATGAGGGAATGTGGGCTTCAGCTAGAAGAGCAAACATATCGCCCACTTCTTGAATATATAATTGACATGGGTCTTGTTCAAGAATTTCAACTTTTCTATGATGTTATCCAAGCTGGTAATCCCAGTTCAATTTCACGATTGGGTTACTATGAAATGTTGCTCTGGATAAGGGTTAACAATGAAGAAATGATCCGGGATATTTGTGAATACATTACAGTCGAAGACAGTAGGGACACTACTTCTTTACGAGAAAGTTACTTATTGGCTCTTTGTGAAAGTGATCGCAAAACAGAGATTTTGGATGTGTTGAAAAATATAGACATAACAAAGCTTGCATCTGCAAAATGTATATCAAATATATTTCAATCGATGGGAAGGCTACAGCTGGAATCAGATGCGGAGAATTTACTTTTGGATTTGAGGGCTTGCGATTATGATGCAGATAAAATTTCAAACTTCATTGCTTGTTATGCGGTTAACATTCCAAATTTAGCGGTTGAAGATATCATCTCAAAAATCGAGAGTTTGCATAATCTTTTGGAAGTTCTGCCTTCATCCTCATCGTATGGAAAGCTCATTTCGTATTGCTGTGGTATGCACAAGGTCGATGCAGCTCTTGATATTGTTGATAAAATGTGTGAAGCAGGCTATATGGTGTCTACTCATATGCTACAATCGATATTACAGATTTGTGAGGAAACTTATGATTATATTTTGGTCCATCGAATCTATTCCATCATCAGTCGCCATCACCACCATTTGGAGTTAAATGGTGAAATATGCAGATGTTTGATACATTTTTGTGTAAGATTAAAAGATTTTGAACGCGCATACGAGATGGTTAAGGAGTTGCAGGAAATGAATTTCAAACCTACGACAGCCATGTACAATGCCATAATGGCAGGATATTTTCGCGAGAAAAACATCGTTGGAGGCTTGGCGGTCCTCAAACACATGCAAGATGCCAATGTAGATCCCGATTCACAGACTTTTAGCTATTTGATTAGCAATTGTGAAACAGAAGATGATATAAATATGTATTATGAAGAACTGAAGCAATTTGACATCTACCCTACAAGACAAATTTTTATGGCCCTTATTAATGCGTATGCAGCTTGTGGCGAATTGGAGAAGGCAAAACAGGTAGTTCTTGATTCACGCATACCATTAAAGTGCTTAAATGAAATTAAGAGTGTCCTTGTCTCAGCTCTTGCATCTCACGGGCAATTGTCTGAGGCACTTGCTATCTATGAGGAGATCAAGAAAGCTGGACACAATTTGGAACCAAAAGCTGTTATAACACTCATCGATGAGTTGCGTCATATAAGTGGAGAGTTGGAGGGGTTGCTTCTCCTGCTGAAAGAGTTGAGTGATCTAAACTACTGGGTTGACGGTTGCTTCAGGGTTATTCAGTACTGTGTTCAGAACCGTCATTTAAGTTGTGCTGTTGACCTGTTCACGCAACTCAAGGATAATTTTGAAAGTGATGAAACAATGACAGAAGTTCTTTTCGATGCAGTGTATTCTCTAATCGCGGGATCCAGCTCCTCACGTTTGCAGTTTGGCTTAGACTTGCTTTGGGCAATCAAGGACGAGCTTGGGCTTGTTCCTTCAAGGCAGTGTCTTGATTTTCTTCTAAGTGCTTGTGCCAATTCAGGAGATTTGAATAATGCTCGTTTGATTTGGAGAGAATACGAGGTTGCTGGATTTCCTTACAACGTATTAAGTTACGTGAGGATGTATCAAGCACTCTTAGCATCAGGAGATCAGAGATCTGCGGACTTTATACTCAAGAAAATTCCAAGAGATGATGCCGAGATTTGTACTGTCATATCAGCATGTCAAAAAACTTATGTTGATAAAGTTAAATCAGTAGAAGGGGAGAAGAAGAAAAAGAATGTTAAATCAGTAGAAGGTGCGAAGAAGAAAAAGAATGTTAAATTAGTAGAAGGGGAGATGAAGAAAAAGAATGTTAAATTAGTAGAAGGGGAGATGAAGAAAAAGAATGTTAATTCTGTAGAAGGGGAGAAGAAGAGGAAGAAGAAGAAGAATAAGAAGAAGAAAAAGAAAGCAACAGAAAAGAAACAAGAGACTGAGTCTTGA 2712 0.392 MRAPTARKLCTLSSYFRSHLQNNPKNHVSSFKSSIPFETQHHFDSDLNLSTLKLHGPSPPEDMPELGEATTQLSSILYTPPVKKLVGEKVDDEEKEKSIVEIPLILDFAHGDSSIKRKEVARERKQKWIFKDTGGERSDRLIKICARKLGATPTVDMFGRLGRETGLKEYNSLIRLCIKKARETDDEYIATDELGKTYHLLKLMRECGLQLEEQTYRPLLEYIIDMGLVQEFQLFYDVIQAGNPSSISRLGYYEMLLWIRVNNEEMIRDICEYITVEDSRDTTSLRESYLLALCESDRKTEILDVLKNIDITKLASAKCISNIFQSMGRLQLESDAENLLLDLRACDYDADKISNFIACYAVNIPNLAVEDIISKIESLHNLLEVLPSSSSYGKLISYCCGMHKVDAALDIVDKMCEAGYMVSTHMLQSILQICEETYDYILVHRIYSIISRHHHHLELNGEICRCLIHFCVRLKDFERAYEMVKELQEMNFKPTTAMYNAIMAGYFREKNIVGGLAVLKHMQDANVDPDSQTFSYLISNCETEDDINMYYEELKQFDIYPTRQIFMALINAYAACGELEKAKQVVLDSRIPLKCLNEIKSVLVSALASHGQLSEALAIYEEIKKAGHNLEPKAVITLIDELRHISGELEGLLLLLKELSDLNYWVDGCFRVIQYCVQNRHLSCAVDLFTQLKDNFESDETMTEVLFDAVYSLIAGSSSSRLQFGLDLLWAIKDELGLVPSRQCLDFLLSACANSGDLNNARLIWREYEVAGFPYNVLSYVRMYQALLASGDQRSADFILKKIPRDDAEICTVISACQKTYVDKVKSVEGEKKKKNVKSVEGAKKKKNVKLVEGEMKKKNVKLVEGEMKKKNVNSVEGEKKRKKKKNKKKKKKATEKKQETES 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03508 903 Gene3D Tetratricopeptide repeat domain 669 902 IPR011990 GO:0005515
Vivi5g03508 903 MobiDBLite consensus disorder prediction 863 880 - -
Vivi5g03508 903 Coils Coil 873 903 - -
Vivi5g03508 903 Pfam Pentacotripeptide-repeat region of PRORP 394 557 IPR033443 -
Vivi5g03508 903 NCBIfam pentatricopeptide repeat 391 420 IPR002885 -
Vivi5g03508 903 NCBIfam pentatricopeptide repeat 463 495 IPR002885 -
Vivi5g03508 903 NCBIfam pentatricopeptide repeat 498 530 IPR002885 -
Vivi5g03508 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 460 494 IPR002885 -
Vivi5g03508 903 MobiDBLite consensus disorder prediction 863 903 - -
Vivi5g03508 903 Pfam PPR repeat 602 627 IPR002885 -
Vivi5g03508 903 Pfam PPR repeat 566 585 IPR002885 -
Vivi5g03508 903 Gene3D Tetratricopeptide repeat domain 441 546 IPR011990 GO:0005515
Vivi5g03508 903 Gene3D Tetratricopeptide repeat domain 322 440 IPR011990 GO:0005515
Vivi5g03508 903 Gene3D Tetratricopeptide repeat domain 547 644 IPR011990 GO:0005515
Vivi5g03508 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Vivi5g03508 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 495 529 IPR002885 -
Vivi5g03508 903 PANTHER OS02G0132600 PROTEIN 6 833 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03508 314 659 Glycosyltransferase AT1G05670 21.348 1.66e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03508 - - tpra:123908063 1336.24