Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03503 ATGGCTCCTGTTGCTCCTCGATCTGGCGATTCGATATTTGCTAACATTGAACGTGTTAACGCGGAGCTATTTACTCTGACATATGGGGCAATTGTGCGGCAATTGCTTACAGATCTGGAAGAAGTTGAGGAAGTCAACAAGCAGCTAGATCAGATGGGTTATAATATTGGAATCCGTTTGATTGATGAGTTTTTGGCTAAATCTAATGTCTCAAGGTGTGTTGATTTCAGAGAGACAGCTGATGTCATTGCAAAGGTTGGTTTTAAAATGTTCCTCGGTGTTACCGCATCCGTGACCAATTGGGATGCTGAAGGAACTTGTTGTAGTATTATTTTGGAAGACAATCCTTTGGTGGACTTTGTTGAGCTTCCTGACAACTATCAAGGTCTGTACTACTGCAACATATTAAGCGGAGTCATTAGAGGAGCCTTGGATATGGTGTCAATGAAGGCTGAGGTGACTTGGCTACGTGATGCGCTTCGAGGTGATGATGTGTTTGAGTTGCAAGTAAAACTTCTCAAGCAAGTTCCAGAAGAGTATCCATATAAGGATGATGAGTAA 561 0.4225 MAPVAPRSGDSIFANIERVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVSRCVDFRETADVIAKVGFKMFLGVTASVTNWDAEGTCCSIILEDNPLVDFVELPDNYQGLYYCNILSGVIRGALDMVSMKAEVTWLRDALRGDDVFELQVKLLKQVPEEYPYKDDE 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03503 186 PIRSF TRAPP_1_Bet3 3 185 IPR016721 GO:0030008|GO:0048193
Vivi5g03503 186 Gene3D Trafficking protein particle complex subunit 3 3 185 - -
Vivi5g03503 186 PANTHER TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3 7 185 IPR016721 GO:0030008|GO:0048193
Vivi5g03503 186 CDD TRAPPC3_bet3 20 174 IPR016721 GO:0030008|GO:0048193
Vivi5g03503 186 FunFam Trafficking protein particle complex subunit 4 185 - -
Vivi5g03503 186 SUPERFAMILY Ligand-binding domain in the NO signalling and Golgi transport 18 176 IPR024096 -
Vivi5g03503 186 Coils Coil 32 52 - -
Vivi5g03503 186 Pfam Transport protein particle (TRAPP) component 24 171 IPR007194 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03503 Vivi-Chr5 127176198 127181379 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03503 K20302 - zju:107432396 355.14