LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi5g03227	ATGACGGAAAATCGTAAAGTTCCGAAGCTTCCAGTTGAAGGAAAGCGCAACATCCTCATAACCAGTGCTCTGCCTTACGTCAACAACGTCCCTCATCTCGGCAACATCATTGGATGTGTGCTTAGTGCGGATGTTTTTGCTCGGTATTGCCGGCTTAGAGGTTACAATGCTATTTACATCTGCGGTACCGATGAGTACGGTACAGCAACAGAGACTAAAGCACTGGAAGAGAATTGTTCTCCCAAAGAGATTTGTGACAAATACCATGTCATTCATAAGGAGGTATATGATTGGTTTGATATAAGTTTTGATGAATTTGGGCGGACTTCTTCCCCCGAGCAAACTGAAGTTTGCCAGGCAATTTTCAAAAAGATACACGAAAACAATTGGCTCTCCGAGGATACATTACAGCAGCTTTACTGCGATACATGCAAAAAGTTCTTAGCTGATCGGCTTGTGGAGGGTACATGTCCTATTCCCGGGTGCGAGTATGATTCTGCTCGAGGAGACCAATGTGAGAAGTGTGGAAACCTTCTAAATCCGACAGAATTAAAGATTCCCAGGTGCAAGGTTTGTCGAAATAGTCCTCGTATTTGTGATACGGACCACTTATTTCTTGAGCTCCCTCTTTTGAAAGATAAATTGGAAAAGTACATCAACGAGATGTCTGTGGCTGGATCATGGAGTCAGAATGCTATTCAAACAACAAATTCATGGTTCAAAATGGGATTAAAGAAACGTTGTATTACCAGAGATCTGAAGTGGGGAGTTCCTGTTCCACATGAAAAATATAGTGACAAGGTTTTCTATGTTTGGTTTGACGCACCTATTGGATATATATCAATCACGGCAAGCTACACACGTGATTGGGAGAAATGGTGGAAAAATCCGGAGAATGTGGAGTTATTTCAGTTTATGGGAAAGGACAATGTGCCATTCCACACTGTAATGTTTCCATCTACTCTACTCGGGACTGATCAAAATTGGACGTTAATGAAGACTATTAGTGTTACTGAATACCTAAATTATGAAGCAGGGAAGTTTTCTAAGAGCAAAGGCGTCGGGGTATTTGGTAATGATGCAAAAGATACTACTATTCCGGTTGAAGTATGGAGGTATTACTTGCTCACAAATAGGCCCGAGGTATCGGATACACTTTTTACATGGTCTGACTTGCAAGCAAAATTAAATACAGAGTTGCTGAATAACTTGGGAAACTTCGTCAACCGAGTTTTGAGTTTTATTGCCAAACCTGCAGGTCAAGGATATGATTCCATTATTCCCACTGTTCCTGATGATGTAAGTGGCGACTCCCATGATCCAACCAAAAAATTGGCCAGCAAAGTTGCTGCATATTTGGAGCAATACATAGAAGCAATGGAGAAGGTTAAACTCAAGCAAGGATTGAAAATTGCAATGAGCATATCCGGTGAGGGGAATGCATATTTGCAGGAAACTGAATTTTGGCGTCTTTACAAGCAAAACCAATCTCTCTGCTCCCTTGTTATGAAAACTGCTGCTGGGGTTGTATATCTTCTTGCCTGTTTATTGGAACCTTTTATGCCATCTTTCAGTCTTGAGGTATTCAAGCAGCTAAATTTGTCTACGGAGATACATCTTTCACTTTCTGATGATAAAGGAGATGTTGATAGAGTAAGAAGGCCCTGGGATCTCCTGAGTGCTGGTCATAAAATTGGAACACCAAAGCCATTGTTCAGGGAACTGAAAGATGAAGAAGTGGAGTTCTACCGGAAGAAATTTGAAGGAAGTCAAGCAGATAGGGTTTTGCGTGCAGAGGCCGAAGCTGCTGAAAATGTTGCTGCACAATTGAAGAAAACAAAAGTTTCAGTGCCGTTGTTTGCAACAGATGGCACTGGGAAGAAAAAATCCGGAGCCAAATCAGCAGCAAAACCATCAAATGAAGCCAAAAACAAGGCTGCTGCTGAACCCGATATTTCCATCACAAGGCTTGATATTCGAGTTGGTCTCATAAAAAAGGCTGGAAAGCATCCTGATGCAGATTCACTATATGTTGAAGAGATTGATGTTGGTGAAGAACAGACAAGAACTGTTGTCAGTGGACTTGTCAAGTATATACCACTTGATGAAATGCAGAACCGAAAAGTCTGTGTTCTTTGCAACTTAAAACCAGCAAGCATGAGGGGCATTAAATCCCAAGCTATGGTTCTTGCTGCTTCCAATGATGATCACACCAAGGTTGAGTTGGTTGAACCACCCAGTTCTGCTTCTGTTGGAGAAAGAATTACATTCCCAGGGCACGAAGGCACTCCTGATGAACTCTTAAACCCAAAGAAGAAAGTTTGGGAGACATTGCAAGTCGATCTGCACTCTAATGAGAAGCTAGAGGCATGCTACAAAAATATCCCACTCACCACTTCAGCTGGCATTTGCACAGTTTCATCAATAAGCAATGGATCAATTAGGTAG	2448	0.4179	MTENRKVPKLPVEGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCSPKEICDKYHVIHKEVYDWFDISFDEFGRTSSPEQTEVCQAIFKKIHENNWLSEDTLQQLYCDTCKKFLADRLVEGTCPIPGCEYDSARGDQCEKCGNLLNPTELKIPRCKVCRNSPRICDTDHLFLELPLLKDKLEKYINEMSVAGSWSQNAIQTTNSWFKMGLKKRCITRDLKWGVPVPHEKYSDKVFYVWFDAPIGYISITASYTRDWEKWWKNPENVELFQFMGKDNVPFHTVMFPSTLLGTDQNWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDAKDTTIPVEVWRYYLLTNRPEVSDTLFTWSDLQAKLNTELLNNLGNFVNRVLSFIAKPAGQGYDSIIPTVPDDVSGDSHDPTKKLASKVAAYLEQYIEAMEKVKLKQGLKIAMSISGEGNAYLQETEFWRLYKQNQSLCSLVMKTAAGVVYLLACLLEPFMPSFSLEVFKQLNLSTEIHLSLSDDKGDVDRVRRPWDLLSAGHKIGTPKPLFRELKDEEVEFYRKKFEGSQADRVLRAEAEAAENVAAQLKKTKVSVPLFATDGTGKKKSGAKSAAKPSNEAKNKAAAEPDISITRLDIRVGLIKKAGKHPDADSLYVEEIDVGEEQTRTVVSGLVKYIPLDEMQNRKVCVLCNLKPASMRGIKSQAMVLAASNDDHTKVELVEPPSSASVGERITFPGHEGTPDELLNPKKKVWETLQVDLHSNEKLEACYKNIPLTTSAGICTVSSISNGSIR	815

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vivi5g03227	815	FunFam	Methionine--tRNA ligase cytoplasmic	401	574	-	-
Vivi5g03227	815	SUPERFAMILY	Methionyl-tRNA synthetase (MetRS), Zn-domain	153	189	IPR029038	-
Vivi5g03227	815	CDD	MetRS_core	17	387	IPR033911	GO:0004825\|GO:0006431
Vivi5g03227	815	SUPERFAMILY	Nucleic acid-binding proteins	655	799	IPR012340	-
Vivi5g03227	815	Gene3D	-	401	574	-	-
Vivi5g03227	815	ProSiteProfiles	tRNA-binding domain profile.	653	756	IPR002547	GO:0000049
Vivi5g03227	815	Hamap	Methionine--tRNA ligase [metG].	16	586	IPR023458	GO:0004825
Vivi5g03227	815	ProSitePatterns	Aminoacyl-transfer RNA synthetases class-I signature.	25	36	IPR001412	GO:0000166\|GO:0004812\|GO:0005524\|GO:0006418
Vivi5g03227	815	CDD	Anticodon_Ia_Met	396	532	IPR041872	-
Vivi5g03227	815	FunFam	tyrosine--tRNA ligase, cytoplasmic isoform X2	652	815	-	-
Vivi5g03227	815	PRINTS	Methionyl-tRNA synthetase signature	399	410	IPR033911	GO:0004825\|GO:0006431
Vivi5g03227	815	PRINTS	Methionyl-tRNA synthetase signature	101	112	IPR033911	GO:0004825\|GO:0006431
Vivi5g03227	815	PRINTS	Methionyl-tRNA synthetase signature	269	280	IPR033911	GO:0004825\|GO:0006431
Vivi5g03227	815	PRINTS	Methionyl-tRNA synthetase signature	304	319	IPR033911	GO:0004825\|GO:0006431
Vivi5g03227	815	PRINTS	Methionyl-tRNA synthetase signature	53	67	IPR033911	GO:0004825\|GO:0006431
Vivi5g03227	815	PRINTS	Methionyl-tRNA synthetase signature	20	33	IPR033911	GO:0004825\|GO:0006431
Vivi5g03227	815	FunFam	Methionine--tRNA ligase	153	189	-	-
Vivi5g03227	815	Gene3D	HUPs	17	400	IPR014729	-
Vivi5g03227	815	SUPERFAMILY	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	404	588	IPR009080	GO:0000166\|GO:0004812\|GO:0005524\|GO:0006418
Vivi5g03227	815	PANTHER	METHIONINE--TRNA LIGASE	4	813	IPR023458	GO:0004825
Vivi5g03227	815	MobiDBLite	consensus disorder prediction	625	648	-	-
Vivi5g03227	815	Pfam	Anticodon binding domain of methionyl tRNA ligase	436	591	IPR041872	-
Vivi5g03227	815	Gene3D	-	652	815	IPR012340	-
Vivi5g03227	815	CDD	tRNA_bind_EMAP-II_like	652	756	-	-
Vivi5g03227	815	Pfam	tRNA synthetases class I (M)	18	412	IPR015413	GO:0000166\|GO:0004812\|GO:0005524\|GO:0006418
Vivi5g03227	815	Gene3D	-	153	189	IPR029038	-
Vivi5g03227	815	NCBIfam	methionine--tRNA ligase	18	538	IPR014758	GO:0000166\|GO:0004825\|GO:0005524\|GO:0006431
Vivi5g03227	815	SUPERFAMILY	Nucleotidylyl transferase	15	398	-	-
Vivi5g03227	815	Pfam	Putative tRNA binding domain	659	753	IPR002547	GO:0000049

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi5g03227	Vivi-Chr5	122232753	122242392	Dispersed/Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi5g03227	K01874		-	gmx:100809861	1432.93