Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03224 ATGGGTCAAGCTTTTCGCAAGCTTTTCGATACCTTCTTCGGCAATACCGAGATGCGGGTTGTCATGCTTGGTCTTGATGCTGCTGGAAAAACAACTATACTCTACAAGCTTCACATTGGAGAAGTTTTATCCACAGTTCCTACAATTGGTTTTAATGTAGAGAAGGTTCAGTATAAGAATGTTATTTTCACCGTTTGGGATGTTGGAGGTCAGGAGAAATTGAGGGCACTCTGGAGGCATTATTTTAACAACACAGATGGTTTGATCTATGTTGTTGATAGTTTGGACCGTGAGAGAATTGGGAAAGCAAAGCAAGAATTCCAGAATATCATAAATGACCCATTTATGCTCAACAGTGTCATCTTGGTGTTAGCCAACAAACAGGACTTGAGAGGAGCGATGACGGCAAGGGAAGTATGTGATGGATTAGGTCTCTTTGATCTCAAAAATAGAAAATGGCACATACAAAGCACTTGTGCACTTAAGGGCGACGGCCTTTATGAGGGTTTGGACTGGTTGTCCTCAACACTAAAGGAGATGAGAGCTGCTGGATACTCTTCATTAGGCCTAGGAACTTCATCTTTCTAG 588 0.4201 MGQAFRKLFDTFFGNTEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRALWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQNIINDPFMLNSVILVLANKQDLRGAMTAREVCDGLGLFDLKNRKWHIQSTCALKGDGLYEGLDWLSSTLKEMRAAGYSSLGLGTSSF 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03224 195 SMART arf_sub_2 1 181 - -
Vivi5g03224 195 Gene3D - 3 186 IPR027417 -
Vivi5g03224 195 CDD Arf1_5_like 18 176 IPR045872 GO:0003924
Vivi5g03224 195 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Vivi5g03224 195 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924|GO:0005525
Vivi5g03224 195 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Vivi5g03224 195 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Vivi5g03224 195 Pfam ADP-ribosylation factor family 6 176 IPR006689 GO:0003924|GO:0005525
Vivi5g03224 195 ProSiteProfiles small GTPase Arf family profile. 11 177 - -
Vivi5g03224 195 PANTHER ADP RIBOSYLATION FACTOR-RELATED 8 175 IPR024156 GO:0005525
Vivi5g03224 195 FunFam ADP-ribosylation factor 2 4 186 - -
Vivi5g03224 195 SMART sar_sub_1 9 177 IPR006689 GO:0003924|GO:0005525
Vivi5g03224 195 NCBIfam small GTP-binding protein domain 16 135 IPR005225 GO:0005525
Vivi5g03224 195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 181 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03224 Vivi-Chr5 122186010 122190932 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03224 K07937 - gmx:100499903 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g03224 5 122186010 122190932 Vivi5g03224 5 122186010 122190932 ECH