Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03161 ATGGCTACCATTAATGGGAACACTGATGCTACTCAACCCATTGTTGCTCCTACAAAACACTCTCTTCCTCCTCCTAAAACCGTCGATTCTAAATCTGTTCTCAAAAGGTTGCAATCTGAATTGATGTCTTTGATGATGAGTGGTGAAACTAGTATATCTGCTTTTCCTGAGGAGGACAACATATTCTTGTGGAAAGGAACAATTAAAGGAAGCAAAGATACAGTGTTTGAAAACACAGATTACAAGCTATCACTTTCTTTTCCAAATGATTATCCATTTAAGCCTCCTAAAGTTAAGTTTGAAACAACCTGTTTCCATCCCAATGTTGATCTTCATGGCAATATATGTTTGGACATTCTTCAGGACAAATGGTCCTCTGCCTATGATGTCAGAACAATTCTACTATCCATTCAAAGTCTTCTTGGAGAGCCAAACATTAGTTCACCTCTAAATCCACAAGCTGCACAGCTATGGAGCAATCAAGAAGATTACAGAAAGATGGTTCTCAAGTTATACAATTCTCCGAGTGCTACCGCTTAA 540 0.3833 MATINGNTDATQPIVAPTKHSLPPPKTVDSKSVLKRLQSELMSLMMSGETSISAFPEEDNIFLWKGTIKGSKDTVFENTDYKLSLSFPNDYPFKPPKVKFETTCFHPNVDLHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNPQAAQLWSNQEDYRKMVLKLYNSPSATA 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03161 179 CDD UBCc 35 172 IPR000608 -
Vivi5g03161 179 MobiDBLite consensus disorder prediction 1 15 - -
Vivi5g03161 179 SUPERFAMILY UBC-like 29 170 IPR016135 -
Vivi5g03161 179 SMART ubc_7 35 177 - -
Vivi5g03161 179 Gene3D Ubiquitin Conjugating Enzyme 26 175 IPR016135 -
Vivi5g03161 179 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 105 120 IPR023313 -
Vivi5g03161 179 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 34 167 - -
Vivi5g03161 179 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 32 177 IPR000608 -
Vivi5g03161 179 MobiDBLite consensus disorder prediction 1 29 - -
Vivi5g03161 179 FunFam ubiquitin-conjugating enzyme E2 20 26 174 - -
Vivi5g03161 179 Pfam Ubiquitin-conjugating enzyme 36 168 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03161 Vivi-Chr5 120952902 120954811 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03161 34 141 Miscellaneous Gene Families AT3G17000 32.743 2.96e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03161 K06688 - csv:101208947 295.819