Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03142 ATGCACAGTCTCATCCGATCCACACTCAGAACCAAGAGGGCTTCAGCTTTAGTATGTGCAGCAGTTCCCAGATGCTTTCAGGAAAATCTACTTCAGGCTCCCTTATGGTCTAGGTCAAGTAGTACAGAGTCTTCTTTGGCAACTGATAATTCAACTGCTGATGTGAAACCTGGCCAAGGGTTCAAGGGCCATGATATGCTTGCCCCTTTCACAGCTGGGTGGCAGGCTACTGATTTGGATCCTTTGGTTATTGAAAAATCTGAGGGATGCTATGTGTATGACATTAATGGGAAGAAATATCTTGACGCACTTGCTGGTCTATGGTCCACTGCCTTAGGGGGGAGCGAGCAACGCCTTGTTGATGCTGCCACTACACAATTAAAGAAATTGCCATTTTACCATTCCTTCTGGAATCGAACCACAAAACCTTCATTGGATCTAGCCAAGGAACTCCTAGAATTTTTTACAGCCAGAAAAATGGCTAAAGCTTTTTTTGTTAATAGTGGATCAGAAGCCAACGACACTCAGGTAAAAATTGTATGGTATTATAACAATGCACTTGGAAGACCAAATAAGAAGAAATTCATAGCGCTTAATAAATCGTATCATGGTTCAACATTGATAGCAGCCAGTCTTTCTGGTCTTCCGGCTATGCATAAAAATTTTGATCTGCCAGCTCCTTTTGTCTTGCATACTGATTGTCCACACTACTGGCGGTATCATCTTCCAGGTGAGACTGAGGAAGAGTTTTCAACCAGATTGGCTAACAATTTGGAGAAGCTAATTCTGAAAGAAGGGCCGGAGACAATTGCTGCATTTATTGCAGAACCAGTGATGGGGGCTGGAGGCGTAATTCTTACACCGTCAACTTATTTTGAAAAGGTCCAAGCTGTTGTTAAGAAGTATGATATCCTTTTTATTGCGGATGAGGTGATCTGTGCCTTTGGGAGGCTTGGGACAATGTTTGGATGTGATAAATATAATATTAAGCCAGACCTTGTCTCCTTGGCAAAGGCACTTTCTTCGGCATATATGCCAATTGGAGCTGTTCTGGTGAGCCCAGAAATCAACGAAGTTATACATTCTCAGAGTAGCAAACTTGGAATATTTTCTCATGGGTTCACTTATTCTGGATCACCTGTACCCTGTGCTGTTGCACTTGAATCACTCAAGATCTACAAGGAAAGAAATATCGTTGACAAAGTGAACAAGATATCTCCTAGGTTCCAAGATGGTATAAAAGCTTTTTCTGATAGCCCAATCATTGGAGAGATACGGGGAACTGGCTTGATCTCGGGGACCGAGTTCGCAGACAACAAATCACCTAATGATCCATTTCCTTCTGAATGGGGAGTAGCTGCCTATTTTGGAGCACAATGTGAGAAAAATGGCATGGTAGTTCGTGTAGCTGGAGATAATATCATGATATGTCCACCACTTATCATCTCCGCTGAAGAAGTTGATGAGTTGATCAGCAAATATGGGAAAGCTTTACGAGCTACTGAAAAAAGAGTACAGGAGCTTAAGTCTCAACGCAAGTAG 1542 0.4241 MHSLIRSTLRTKRASALVCAAVPRCFQENLLQAPLWSRSSSTESSLATDNSTADVKPGQGFKGHDMLAPFTAGWQATDLDPLVIEKSEGCYVYDINGKKYLDALAGLWSTALGGSEQRLVDAATTQLKKLPFYHSFWNRTTKPSLDLAKELLEFFTARKMAKAFFVNSGSEANDTQVKIVWYYNNALGRPNKKKFIALNKSYHGSTLIAASLSGLPAMHKNFDLPAPFVLHTDCPHYWRYHLPGETEEEFSTRLANNLEKLILKEGPETIAAFIAEPVMGAGGVILTPSTYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVSLAKALSSAYMPIGAVLVSPEINEVIHSQSSKLGIFSHGFTYSGSPVPCAVALESLKIYKERNIVDKVNKISPRFQDGIKAFSDSPIIGEIRGTGLISGTEFADNKSPNDPFPSEWGVAAYFGAQCEKNGMVVRVAGDNIMICPPLIISAEEVDELISKYGKALRATEKRVQELKSQRK 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03142 513 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 306 343 IPR005814 GO:0008483|GO:0030170
Vivi5g03142 513 Coils Coil 491 511 - -
Vivi5g03142 513 PIRSF Transaminase_4ab_Lys_Orn 37 501 IPR005814 GO:0008483|GO:0030170
Vivi5g03142 513 SUPERFAMILY PLP-dependent transferases 73 499 IPR015424 -
Vivi5g03142 513 Gene3D Aspartate Aminotransferase, domain 1 82 498 IPR015422 GO:0003824
Vivi5g03142 513 CDD OAT_like 78 498 IPR005814 GO:0008483|GO:0030170
Vivi5g03142 513 PANTHER ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE 50 499 - -
Vivi5g03142 513 Gene3D - 116 398 IPR015421 GO:0003824
Vivi5g03142 513 Pfam Aminotransferase class-III 81 497 IPR005814 GO:0008483|GO:0030170
Vivi5g03142 513 FunFam Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, probable 116 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03142 Vivi-Chr5 120717386 120725611 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03142 K16871 - gmx:100792355 889.412