Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03115 ATGGAGAGGAAAAGTGGAAAGGCAGTAGATGTTCTAGATGGTTCTAATATTATGGAGTTAGTTGGAAACAAAGATGTTTTCAGCAACTTCGTGAACCATAAGTTTCAAGAGTTGGATAGAGATAGAGATGGTAAACTTTCTGTGAATGAACTGAAACCTGCTGTTTCTGATATCGGTGCTGCTCTTGGTTTGCCTCCTAAAGGGAATAATCCTGATTCTGATCACATCTATTCTGAGGTTTTGAATGAATTCACACATGGAAAGCATGAAAAAGTGAGCAAGACTGAGTTCAAAGAGGTTCTTTCAGACATTTTGTTGGGCATGGCTGCTGGACTCAAACGAGACCCGATTGTGATACTTCGCATTGATGGCGAAGATCTTCTCGAGTTTCTTAATGGCTCCGTTTATGAACCTGAAATCGTATCCATTTTCTCTCAAATTGAATCACCTCATGCATCTCTTCATGATCTTATAATTCAAGCTCTTAGCAAACTCAATGTTGATCAAGGGATTCCTCCTACTTCTGATCCTTGGGTTATTAACAACATTGTGGAACCAGCACTAGCACTGCTTTCTAAACATGGAACTTATTTGAATAAGCCAGTTTCTCAAGAGATATTTATGGAGGAATTTAAGAAAGTGGCTTTGCTCGTAGCTAATCGTCTTCGGGAGCAACCGGTCATAGTTGCTCATAGTGAAAGCAAATTTGATGGAAGTGGTATTAAGAGACTATTATCAAATAAGTTTGAATTTGACAAGATTTTGAGCTCGGCTATGGAGACTCTCCCGAAAGATCGTAATGGAAAAATGTCAAAGGATTATCTCCGAGTGGCGCTGGACGTGGTGGCTCCGTCCGCTGCTTTACCTCCATTTGGTGCAGTTGAAGAGATGGATAAGGTTATCGGTGAAGTGTTTAAGATGGTGAGTGCTGATGACGCGAAGTTGGTGAAAGAAGATGAGTTCAAGAAAATATTAACTGAAATATTGGGGAGTCTCATGTTGCAATTGGAAGGAAATCCTATATCAGTTTCTTCAAATTCTGTAGTGCATGAGCCTCTGGGTTCATCTTCAACTCTTCTGCAGCCATCCCCTACTACTGAAACAACGATTGCATAG 1116 0.4041 MERKSGKAVDVLDGSNIMELVGNKDVFSNFVNHKFQELDRDRDGKLSVNELKPAVSDIGAALGLPPKGNNPDSDHIYSEVLNEFTHGKHEKVSKTEFKEVLSDILLGMAAGLKRDPIVILRIDGEDLLEFLNGSVYEPEIVSIFSQIESPHASLHDLIIQALSKLNVDQGIPPTSDPWVINNIVEPALALLSKHGTYLNKPVSQEIFMEEFKKVALLVANRLREQPVIVAHSESKFDGSGIKRLLSNKFEFDKILSSAMETLPKDRNGKMSKDYLRVALDVVAPSAALPPFGAVEEMDKVIGEVFKMVSADDAKLVKEDEFKKILTEILGSLMLQLEGNPISVSSNSVVHEPLGSSSTLLQPSPTTETTIA 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03115 371 SMART efh_1 300 328 IPR002048 GO:0005509
Vivi5g03115 371 SMART efh_1 30 58 IPR002048 GO:0005509
Vivi5g03115 371 SMART efh_1 254 282 IPR002048 GO:0005509
Vivi5g03115 371 SUPERFAMILY EF-hand 33 339 IPR011992 -
Vivi5g03115 371 Gene3D - 31 331 - -
Vivi5g03115 371 ProSiteProfiles EF-hand calcium-binding domain profile. 26 61 IPR002048 GO:0005509
Vivi5g03115 371 ProSitePatterns EF-hand calcium-binding domain. 39 51 IPR018247 -
Vivi5g03115 371 Pfam EF-hand domain pair 33 100 IPR002048 GO:0005509
Vivi5g03115 371 MobiDBLite consensus disorder prediction 352 371 - -
Vivi5g03115 371 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 122 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03115 Vivi-Chr5 119942407 119947341 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03115 11 368 EF-hand Containing Proteins AT4G38810 67.688 2.87e-172 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03115 - - gmx:100820516 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g03115 5 119942407 119947341 Vivi5g03115 5 119942407 119947341 ECH