Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03095 ATGGGAGATGAAGGTATAGTGAGAAGTGTCACAAAGCATGTCACACCAGGTAAGGCTACTATATTGGCTCTTGGCAAGGCTTTCCCTCACCAGCTTGTCATGCAAGAGTATTTAGTTGATGGATATTTCAGGGACACTAATTGTGACAATCCTGAGCTTAAGCAGAAACTTGCTAGACTTTGCAAGACAACGACAGTGAAAACGAGGTATGTTGTTATGTCAGACGAGATACTCAAAAAGTATCCAGAACTTGCTGTTGAAGGCACGGCTACTGTGAAACAGCGACTAGAGATATGTAACAAGGCAGTGACACAAATGGCGATTGAAGCTTCTCAAGTATGCATAAAGAATTGGGGTGGATCTTTATCGAATATAACACATGTGGTTTATGTTTCGTCTAGTGAAGCTAGGTTACCGGGCGGTGATCTTTATTTATCAAGCGGATTAGGACTGAGTCCTAAAGTTCAACGGATCATGCTCTATTTTGCTGGTTGTTCTGGAGGTGTAGCTGGTTTGCGCGTAGCAAAAGACATAGCTGAAAACAACCCTGGAAGTAGAGTTTTGCTTGCTACTTCAGAGACAACAATTATTGGATTCAAGCCACCAAGTGCTGATAGACCCTATGATCTTGTTGGTGTAGCACTCTTTGGAGATGGTGCTGGTGCTATGATTATTGGTTCAGACCCTATACTGGAAACTGAGAAGCCGTTGTTTGAGCTTCATACTTCAGCTCAGGAGTTTATACCAGACACTGAGAAGAAAATCGACGGAAGACTGACAGAGGAGGGGATAAGCTTCACGCTAGCGAGGGATCTTCCACAGATAATCGAAGACAATGTTGAGGGATTCTGTGACAAACTAATGGATGTTGGTGGGTTGGAGAATAAGGAGTACAATAAGCTGTTTTGGGCAGTTCATCCAGGAGGGCCTGCGATATTGAATCGCATGGAGAAAAAGCTTGAGCTGTTGCCTGAGAAGCTGAATGCTAGTAGGAAAGCTCTTAGGGATTATGGAAATGCTAGCAGTAATACTATTGTTTATGTGCTGGAGTACATGATAGAAGAGGGAAACAAGATTAGAAAGGAAGGAGGAGGAGATATTGAATGGGGATTGATACTGGCTTTTGGACCTGGAATCACTTTTGAAGGGATTCTAGCTAGGAACCTTTGTGCTTAA 1176 0.4303 MGDEGIVRSVTKHVTPGKATILALGKAFPHQLVMQEYLVDGYFRDTNCDNPELKQKLARLCKTTTVKTRYVVMSDEILKKYPELAVEGTATVKQRLEICNKAVTQMAIEASQVCIKNWGGSLSNITHVVYVSSSEARLPGGDLYLSSGLGLSPKVQRIMLYFAGCSGGVAGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSADRPYDLVGVALFGDGAGAMIIGSDPILETEKPLFELHTSAQEFIPDTEKKIDGRLTEEGISFTLARDLPQIIEDNVEGFCDKLMDVGGLENKEYNKLFWAVHPGGPAILNRMEKKLELLPEKLNASRKALRDYGNASSNTIVYVLEYMIEEGNKIRKEGGGDIEWGLILAFGPGITFEGILARNLCA 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03095 391 Pfam Chalcone and stilbene synthases, C-terminal domain 239 389 IPR012328 -
Vivi5g03095 391 Gene3D - 3 236 IPR016039 GO:0016746
Vivi5g03095 391 FunFam Chalcone synthase 2 4 236 - -
Vivi5g03095 391 SUPERFAMILY Thiolase-like 14 232 IPR016039 GO:0016746
Vivi5g03095 391 PIRSF PKS_III 6 390 IPR011141 GO:0009058|GO:0016747
Vivi5g03095 391 CDD CHS_like 19 385 - -
Vivi5g03095 391 Gene3D - 237 388 IPR016039 GO:0016746
Vivi5g03095 391 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 12 389 IPR011141 GO:0009058|GO:0016747
Vivi5g03095 391 FunFam Chalcone synthase 1 237 390 - -
Vivi5g03095 391 SUPERFAMILY Thiolase-like 216 387 IPR016039 GO:0016746
Vivi5g03095 391 Pfam Chalcone and stilbene synthases, N-terminal domain 13 229 IPR001099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03095 Vivi-Chr5 119657265 119658594 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03095 89 376 Miscellaneous Gene Families AT4G34250 23.344 1.61e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03095 - - vun:114168705 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g03095 5 119657265 119658594 Vivi5g03095 5 119657265 119658594 ECH