Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi5g03060 | ATGAAGCTCCGCCAATTCCGTCGCGCACCCCTTTCATTCTCACTCTCAAACCCTCACCTTCAAAGAAACTTCTGCACCTCCAAATTCAACGACGAAAACGACACTCGTTTCGTATCACTCATTTCCGACATTGTTCGAGGAAATCAAAGTTGGAATGTAGCATTCAACGACCCTTCAATTTCATCCACATTGAAACCCCATCACGTAGAACGAGTCTTAATCAACACCTTACATGATTCCAAGTTAGCTTTAAGGTTCTTCAACTTTCTCGGTTTACACAAAAACATGAACCATTCCACAACCTCGTTTGCCATCTTAGTTCATGCCCTTGTTCAAAATAAGCTTTTTTGGCCTGCAAATTCTCTGTTGCAAACCCTTCTCCTTCGTGGGTCTGACCCAAAATTAGTTTTTGACAAGTTTCTAGAAACTTATAAACAGTGTAAGTTTTCTTCCACTTTGGGTTTTGATTTTTTGGTTCAGAGTTACTTGCAGAACACAAGAGTTTTTGATGCTGTGTTTGTTTTGAAACTCATGCTTGCTAATACTTTGTTGCCTGAGGTTAGAACATTGAGTACACTCTTGAATGGGTTATTGAGGATTAGAAAATTTATATTGGTTTGGGAACTTTTTGATGAGTCTGTGAATGCTGGTGTTAAACCTGATCCTTATACTTGCTCTGCCGTGATTCGGAGCTTGTGTGAATTGAAGGATTTTTTTAGAGCTAAGGAAAAGATTAGGTGGATGGAATCTAATAGGTTTGATCTGAGTATTGTTACTTACAATGTCTTAATTCATGGTTTGTGTAAGGGTCATCGGGTTTTGGAAGCTGTCGAGGTTAGAAAATCGTTGAGGGAAAAGGGTTTGAAGGAAGATGTGGTTACATATTGTACACTAGTGCTTGGATTTTGTAGGGTTCAACGATTTGAGGATGGAATTTGCCTCATGAATGAAATGATTGAATTAGGGCTTGTTCCATCCGAGGCTGCTATATCGGGGTTAGTGGATGGGTTAAGAAAGAAGGGAAAGATTGATAGTGCTTATGATTTGGTTGTTAAGTTAGCCAAATTCGATTTTTTGCCAAGTTTGTTTGTGTATAATTCATTATTAAACTCTTTGTGCAAAGGTGGGAATTTGGATAAAGCAGAGTTGCTTTATAATAATATGCGTTTGATGAACTTGCCGCGGAATGATGTCACATACTCTATTCTGATTGATTCCTTTTGCAAAAGGGGGAGATTAGATGTTGCAGCATCTTATTTTGATAGAATGATAGAAGACGGTATAAGAGAATCCGTATATCCCTACAACTCTTTGATACACGGTCAATGCAAGTTTGGGGATTTGAGTGCCGCTGAGTCTCTGTATACCGAGATGATCAATAAAGGGGTAGAGCCAACAGCTACTACCTTTGCAACATTAATTAGTGGATATTGCAAAGACCTACAAGTACATAAAGCATTTAAGCTATATAGTGAGATGACCGAGAAAGAAATTGCACCGACTGTATATACTTTCACCGCACTTATTTATGGTCTTTGCAGCACAAATGAGATGGCTGAAGCATCCAAACTTTTCGATGAAATGGTGGAAAGGAAAATCAAGCCAACTGAAGTGACATATAATGTTATGATAGAAGGGTATTGTATGGCTCATAACATGGATAAAGCCTTTGAATTGCTGGAAGACATGATCCGTAAAGGCCTTGTTCCGGATACTTATACGTACAGACCTCTTATCACCGGCCTTTGTTCTACTGGTAGGGTTTCAGAAGCTAAAGATTTTATTGATGATCTCCACAAGAAAAACCTCAAGTTAAATGAGATGTGCTATAGTGCGCTTCTACATGGTTATTGCGGGGAAGGAAGAATGACGGAGGCACTGAGTGTTTCTTGTGAGATGATTCAACGAGGAATCAACATGGACCTGGTTTGCCATGGTGTACTTATTGATGGTGCTCTAAAGCAACCAGACATGAAAATGCTATTTAGTCTCTTAAAAAAGATGTACAGTCAAGGATTGAGACCCGATAGTGTAATGTATACAAGTATGATTGATGCATACAGCAAAGAAGGGTCTTTTAAGAAAGCCACTGAATGTTGGGATTTAATGGTTACTGAGAAATGTGTTCCTAATGTTGTGACTTACACGGCTTTCATGAATGGTTTATGCAAAGCAGGTGAAACTGATAGAGCAGGTCTCCTTTTTGAAAAAATGCTGGCGGAAAATATCCATCCTAATTCAGTTTCATATGGTTGTTTTCTCCACCGTCTTACGGAGGAGGGAAATATGAAGGAAGCTACAGAGCTTCACTGTGCAATGCTTAAAGGGCATTTAGCAAGCACAGCAACATACAACATTCTTATCCGGGGCTTCTGCAAATTGGGTAGATTAATTGAAGCCACCGAAATTCTTTCTGAAATGACTGAAAATGGGATTTGCACCGATTGTATAACCTATTCAACTTTAATTTATGAGTATTGCAGAAGCGGTGATGTTGTAGCAGCAGTTAAATTGTGGGATACCATGTTAAAAAAAGGCGTTGAGCCAGATTTGGTTGCATTTAACTTGCTAATATATGGTTGCTGTGTTAATGGAGAGCTCAACAAGGCATTTGAATTGCGTGATGACATGTTGAGAAGAGGGTTGAAGCCAAGACAAAATTTACAACTGCAAAATGGGTAA | 2682 | 0.39 | MKLRQFRRAPLSFSLSNPHLQRNFCTSKFNDENDTRFVSLISDIVRGNQSWNVAFNDPSISSTLKPHHVERVLINTLHDSKLALRFFNFLGLHKNMNHSTTSFAILVHALVQNKLFWPANSLLQTLLLRGSDPKLVFDKFLETYKQCKFSSTLGFDFLVQSYLQNTRVFDAVFVLKLMLANTLLPEVRTLSTLLNGLLRIRKFILVWELFDESVNAGVKPDPYTCSAVIRSLCELKDFFRAKEKIRWMESNRFDLSIVTYNVLIHGLCKGHRVLEAVEVRKSLREKGLKEDVVTYCTLVLGFCRVQRFEDGICLMNEMIELGLVPSEAAISGLVDGLRKKGKIDSAYDLVVKLAKFDFLPSLFVYNSLLNSLCKGGNLDKAELLYNNMRLMNLPRNDVTYSILIDSFCKRGRLDVAASYFDRMIEDGIRESVYPYNSLIHGQCKFGDLSAAESLYTEMINKGVEPTATTFATLISGYCKDLQVHKAFKLYSEMTEKEIAPTVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIEGYCMAHNMDKAFELLEDMIRKGLVPDTYTYRPLITGLCSTGRVSEAKDFIDDLHKKNLKLNEMCYSALLHGYCGEGRMTEALSVSCEMIQRGINMDLVCHGVLIDGALKQPDMKMLFSLLKKMYSQGLRPDSVMYTSMIDAYSKEGSFKKATECWDLMVTEKCVPNVVTYTAFMNGLCKAGETDRAGLLFEKMLAENIHPNSVSYGCFLHRLTEEGNMKEATELHCAMLKGHLASTATYNILIRGFCKLGRLIEATEILSEMTENGICTDCITYSTLIYEYCRSGDVVAAVKLWDTMLKKGVEPDLVAFNLLIYGCCVNGELNKAFELRDDMLRRGLKPRQNLQLQNG | 893 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi5g03060 | 893 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 606 | 640 | IPR002885 | - | |
| Vivi5g03060 | 893 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 256 | 290 | IPR002885 | - | |
| Vivi5g03060 | 893 | Pfam | PPR repeat | 775 | 808 | IPR002885 | - | |
| Vivi5g03060 | 893 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 361 | 395 | IPR002885 | - | |
| Vivi5g03060 | 893 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 780 | 814 | IPR002885 | - | |
| Vivi5g03060 | 893 | Pfam | PPR repeat | 435 | 463 | IPR002885 | - | |
| Vivi5g03060 | 893 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 291 | 325 | IPR002885 | - | |
| Vivi5g03060 | 893 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 850 | 884 | IPR002885 | - | |
| Vivi5g03060 | 893 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 186 | 220 | IPR002885 | - | |
| Vivi5g03060 | 893 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 711 | 745 | IPR002885 | - | |
| Vivi5g03060 | 893 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 388 | 653 | - | - | |
| Vivi5g03060 | 893 | Pfam | PPR repeat family | 675 | 724 | IPR002885 | - | |
| Vivi5g03060 | 893 | Pfam | PPR repeat family | 185 | 233 | IPR002885 | - | |
| Vivi5g03060 | 893 | Pfam | PPR repeat family | 606 | 651 | IPR002885 | - | |
| Vivi5g03060 | 893 | Pfam | PPR repeat family | 469 | 514 | IPR002885 | - | |
| Vivi5g03060 | 893 | Pfam | PPR repeat family | 817 | 862 | IPR002885 | - | |
| Vivi5g03060 | 893 | Pfam | PPR repeat family | 256 | 304 | IPR002885 | - | |
| Vivi5g03060 | 893 | Pfam | PPR repeat family | 360 | 409 | IPR002885 | - | |
| Vivi5g03060 | 893 | Pfam | PPR repeat family | 535 | 584 | IPR002885 | - | |
| Vivi5g03060 | 893 | Gene3D | Tetratricopeptide repeat domain | 54 | 211 | IPR011990 | GO:0005515 | |
| Vivi5g03060 | 893 | Gene3D | Tetratricopeptide repeat domain | 425 | 496 | IPR011990 | GO:0005515 | |
| Vivi5g03060 | 893 | Gene3D | Tetratricopeptide repeat domain | 355 | 424 | IPR011990 | GO:0005515 | |
| Vivi5g03060 | 893 | Gene3D | Tetratricopeptide repeat domain | 497 | 564 | IPR011990 | GO:0005515 | |
| Vivi5g03060 | 893 | Gene3D | Tetratricopeptide repeat domain | 212 | 354 | IPR011990 | GO:0005515 | |
| Vivi5g03060 | 893 | Gene3D | Tetratricopeptide repeat domain | 775 | 888 | IPR011990 | GO:0005515 | |
| Vivi5g03060 | 893 | Gene3D | Tetratricopeptide repeat domain | 657 | 762 | IPR011990 | GO:0005515 | |
| Vivi5g03060 | 893 | Gene3D | Tetratricopeptide repeat domain | 571 | 656 | IPR011990 | GO:0005515 | |
| Vivi5g03060 | 893 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 466 | 500 | IPR002885 | - | |
| Vivi5g03060 | 893 | SUPERFAMILY | HCP-like | 612 | 811 | - | - | |
| Vivi5g03060 | 893 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 536 | 570 | IPR002885 | - | |
| Vivi5g03060 | 893 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 676 | 710 | IPR002885 | - | |
| Vivi5g03060 | 893 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 501 | 535 | IPR002885 | - | |
| Vivi5g03060 | 893 | NCBIfam | pentatricopeptide repeat | 258 | 288 | IPR002885 | - | |
| Vivi5g03060 | 893 | NCBIfam | pentatricopeptide repeat | 678 | 712 | IPR002885 | - | |
| Vivi5g03060 | 893 | NCBIfam | pentatricopeptide repeat | 398 | 428 | IPR002885 | - | |
| Vivi5g03060 | 893 | NCBIfam | pentatricopeptide repeat | 783 | 815 | IPR002885 | - | |
| Vivi5g03060 | 893 | NCBIfam | pentatricopeptide repeat | 609 | 641 | IPR002885 | - | |
| Vivi5g03060 | 893 | NCBIfam | pentatricopeptide repeat | 713 | 746 | IPR002885 | - | |
| Vivi5g03060 | 893 | NCBIfam | pentatricopeptide repeat | 538 | 572 | IPR002885 | - | |
| Vivi5g03060 | 893 | NCBIfam | pentatricopeptide repeat | 852 | 884 | IPR002885 | - | |
| Vivi5g03060 | 893 | NCBIfam | pentatricopeptide repeat | 364 | 395 | IPR002885 | - | |
| Vivi5g03060 | 893 | NCBIfam | pentatricopeptide repeat | 817 | 850 | IPR002885 | - | |
| Vivi5g03060 | 893 | NCBIfam | pentatricopeptide repeat | 573 | 607 | IPR002885 | - | |
| Vivi5g03060 | 893 | NCBIfam | pentatricopeptide repeat | 503 | 537 | IPR002885 | - | |
| Vivi5g03060 | 893 | NCBIfam | pentatricopeptide repeat | 293 | 327 | IPR002885 | - | |
| Vivi5g03060 | 893 | NCBIfam | pentatricopeptide repeat | 435 | 466 | IPR002885 | - | |
| Vivi5g03060 | 893 | NCBIfam | pentatricopeptide repeat | 469 | 501 | IPR002885 | - | |
| Vivi5g03060 | 893 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 431 | 465 | IPR002885 | - | |
| Vivi5g03060 | 893 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 396 | 430 | IPR002885 | - | |
| Vivi5g03060 | 893 | SUPERFAMILY | HCP-like | 332 | 543 | - | - | |
| Vivi5g03060 | 893 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 571 | 605 | IPR002885 | - | |
| Vivi5g03060 | 893 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 815 | 849 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi5g03060 | 420 | 888 | Glycosyltransferase | AT1G05670 | 29.362 | 2.29e-70 | 246 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi5g03060 | - | - | psat:127105853 | 1701.8 |