Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03046 ATGAGAGCCTTATTCAGAACCTCAAAATCACTCGCAACCAATTTCTTGTTCAACGGAACAAAACCTGAATTCGCACCATGTAGAAATCGAGCCTACAGTTTGATCCCAATGGTCATTGAAACCTCTTCCAGAGGTGAAAGAGCCTACGATATCTTCTCTCGTCTTCTCAAGGAACGCATCATTTGTATCAATGGACCCATCTCTGATGACACCTCTCATGTCGTTGTTGCTCAGCTTTTGTTTCTTGAATCTGAAAACCCTTCCAAGCCTATCAACATGTACCTCAATTCCCCTGGTGGTGCTGTTACTGCAGGGCTTGCAATTTATGATACTATGCAGTACATTCGGTCTCCGATCAACACAATGTGTTTGGGGCAGGCTGCGTCCATGGCTTCTCTCCTGTTGAGTGCGGGTGCCAAGGGTCAGAGGCGTTCTCTTCCGAATGCTACAATCATGATTCACCAGCCTTCTGGTGGATACAGTGGCCAGGCAAAGGATATGCAAATTCATTCCGATCATATTAAAAAAATCTCGGAAGAGCTGAATAAGTTGTACGCCAAGCACACGGGCCAACCGATTGATGATATTGAGAAGAAGATGGATAGAGATCATTTTATGTCCGCTAAAGAGGCAATGGAGTATGGGATTATTGATGAGGTTATTGATCAGAGACCTATGACTTTGGTCTCTGATGCTGTTGGCGATGAAGGCAAAGATAAAGGTTCAAATTAG 732 0.4426 MRALFRTSKSLATNFLFNGTKPEFAPCRNRAYSLIPMVIETSSRGERAYDIFSRLLKERIICINGPISDDTSHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSPINTMCLGQAASMASLLLSAGAKGQRRSLPNATIMIHQPSGGYSGQAKDMQIHSDHIKKISEELNKLYAKHTGQPIDDIEKKMDRDHFMSAKEAMEYGIIDEVIDQRPMTLVSDAVGDEGKDKGSN 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03046 243 ProSitePatterns Endopeptidase Clp histidine active site. 143 156 IPR033135 -
Vivi5g03046 243 PRINTS Clp protease catalytic subunit P signature 121 138 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vivi5g03046 243 PRINTS Clp protease catalytic subunit P signature 199 218 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vivi5g03046 243 PRINTS Clp protease catalytic subunit P signature 90 110 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vivi5g03046 243 PRINTS Clp protease catalytic subunit P signature 50 65 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vivi5g03046 243 PRINTS Clp protease catalytic subunit P signature 142 161 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vivi5g03046 243 FunFam ATP-dependent Clp protease proteolytic subunit 33 225 - -
Vivi5g03046 243 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 28 228 IPR023562 -
Vivi5g03046 243 Pfam Clp protease 44 223 IPR023562 -
Vivi5g03046 243 ProSitePatterns Endopeptidase Clp serine active site. 121 132 IPR018215 -
Vivi5g03046 243 CDD S14_ClpP_2 50 220 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vivi5g03046 243 SUPERFAMILY ClpP/crotonase 43 225 IPR029045 -
Vivi5g03046 243 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 34 224 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vivi5g03046 243 Gene3D - 25 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03046 Vivi-Chr5 118835508 118837465 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03046 K01358 - gmx:100782585 365.155