Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03040 ATGGCGACTCTGCAATTCACATTCACCGATTCATCTACTCTATGCAGACCGTTATTATCTCAATTACCTTCTAAATCTATTCATTCTCGAACTCGAAGCTTCGTCGTCAAAGCTTCCTCCGAACTCTCCAGAACGAGGAGACAGTTCATCGCGGAAACCACGGCTATATCGGTGTTGGTACCTTCTCAGTTGGTGAAAGCTGAAGAAACTCTTTCGGAGTGGGAAAGAGTTTATCTACCTATCGATCCTGGTGTTGTCCTTCTGGATATCGCTTTTGTGCCTGAAGACCCTAACCATGGTTTTCTCCTGGGGACGAGACAAACCCTTTTGGAGACTAAAGATGGAGGAAACACTTGGGCTCCACGATCTATTCCATCTGCAGAAGATGAAGATTTTAACTATAGGTTTAATTCTATCAGCTTCAAAGGGAAAGAAGGATGGATAGTGGGAAAACCTGCAATTCTGCTCTACACTTCTGATGCTGGAGATAGTTGGGAAAGGATACCACTCAGTGCTGAGCTTCCAGGCGATATGGTATACATAAAGGCGACTGATGACAAGGGTGCGGAGATGGTGACTGATGAAGGTGCAATATATGTTACTGCAAATAGAGGATACAATTGGAAGGCTGCTGTTCAGGAATCAGTTTCGGCTACGCTTAATAGAACAGTTTCTAGTGGTATTAGTGGTGCAAGTTATTACACTGGAACTTTCAATACTGTCAATCGATCTCCCGATGGAAGGTATGTTGCAGTCTCAAGTCGTGGCAACTTCTACTTGACCTGGGAGCCTGGTCAGGCGTACTGGCAGCCACATAACAGAGCAGTTGCTAGAAGAATCCAAAACATGGGATGGAGAGCTGATGGAGGCCTGTGGCTTCTTGTCCGTGGAGGTGGTCTGTATCTCAGCAAGGGCACGGGGATAACTGAAGAATTTGAGGAAGTTCCTGTTCAAAGCCGGGGGTTTGGCATTCTTGATGTTGGATATCGTTCAACGGATGAGGCTTGGGCAGCAGGTGGGAGCGGTGTTCTCTTGAGAACTAATAACGGTGGCAAGTCATGGATTCGTGACAAAGCTGCTGACAATATTGCTGCAAACTTATACGCAGTAAAGTTCATTGATGACAAAAAGGGATTTGTATTGGGAAATGATGGTGTCTTGCTTCGCTACCTTGGATAG 1179 0.4563 MATLQFTFTDSSTLCRPLLSQLPSKSIHSRTRSFVVKASSELSRTRRQFIAETTAISVLVPSQLVKAEETLSEWERVYLPIDPGVVLLDIAFVPEDPNHGFLLGTRQTLLETKDGGNTWAPRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGDSWERIPLSAELPGDMVYIKATDDKGAEMVTDEGAIYVTANRGYNWKAAVQESVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQAYWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGITEEFEEVPVQSRGFGILDVGYRSTDEAWAAGGSGVLLRTNNGGKSWIRDKAADNIAANLYAVKFIDDKKGFVLGNDGVLLRYLG 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03040 392 Gene3D - 72 288 IPR015943 GO:0005515
Vivi5g03040 392 PANTHER PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTIC 26 392 - -
Vivi5g03040 392 Pfam Photosynthesis system II assembly factor YCF48 69 390 IPR028203 -
Vivi5g03040 392 PIRSF Photosystem_II_Ycf48-like 35 392 IPR016705 -
Vivi5g03040 392 SUPERFAMILY Oligoxyloglucan reducing end-specific cellobiohydrolase 73 391 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03040 - - gmx:100810566 704.516