Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi5g02991 | ATGGCTCAACAACCTCTCTCCACCGAAACCCCTAATTCTTCTTCTGCAACTCCCGCATCATCATCACCGGCGCCACCAATCTCTTACGGTGTACATCAAAATGTCAACGTTTCTGGGAATTCTCACCAGTTGTCCTCACATTCCGGGATGAAGCCTAATTCAGCTGTTAATCCTCCTCATATGTCTGTTCAACCTCCAGTTCACGGTCTCCCTCCACATGCCGCTGCCCCTTCATTTTTGTACAATACTCCCCACAGTGTGCCGGTTTTTACTGGCAACCAACATGCGCAATCTACAACTAACATGCCCGATTCTGGTACCCAAGATTTTAGTAAAATGTCATCTGCATCAAGTAACCAACATCCTGTTCCCGCTCTTACTTCTACATCTCCAATGCCACCGCCATCTGACCCTAACTACCGCCCCACTACTTTATGGATGCCAGCTGTCCCATCATTTCCCGTCCATCCTGTAATGCCTGGAGCTCCTGGCCCCCCTGGATTAGCAAAACCTGTGAGAATTCCCTCCAATCCAGCTGTTCCACCTCCAAGCACAGAGTTTTCCTCAGCTGCAGCACTGAGACAGAATATACCTACTGGTCCCATTGCATTAGATCCTAATGCCTCACATCAAGGTTTGCCCTATCCATCCTTACCTTCCATGGTTGCTCCTCCTCAGGGGTTTTGGTTACAGCCTCCCCAGATGAGTGGTATACCTAGGCCACCATTTCATCAATATCCTGCTGCTTTTCCTGGTCCCTTTCCATTTCCAGCACGTGGTGTTACTCTTCCTACTGTTCCAGTGCCTGATTCTCAACCTCCCGGTGTTACTCCTGTGGGTCCTGTTGGTATTTCTACTTTTTCTGCTTCCAGTCATCAGCTGAGGGGAACACCTAGTTTGCAGGCCGAAGTAATTTCAGCACATGCTGATGACAAAAAGTTAAATGCCATTATGACTCAAAATGAGGATGCTGCTAATGATCAACTAGATGCTTGGACTGCCCACAAGAGTGAAGCAGGAATTGTATACTATTATAATGTTGTGACACGGGAATCGACATACAACAAACCTGCTGGCTTTAAAGGGGAGGCTCACCAAGTTTCTGGGCAGCCTACTCCAGTTTCAATGGTAGATTTGCCTGGTACTGATTGGCAGTTAGTCTCTACTAGTGATGGGAAAAAATATTACTATAACAAGCAAACCAAGACAAGCTGCTGGCAAGTTCCAATTGAGGTGGCTGAATTAAAAAAAAAGCAGGATGGTGATGTTACGAAAGATAGTTTAATGCCAGTTCCAAATACTAATTCATCTTCTGATAGAGGGTCTGGAATGGTTGCTCTGAATGCTCCTGCTATTATTACTGGTGGTCGTGATGCTGCAGCTCCTAAGCCCTCTAGTGTACAGAGCTCACCATCGGCACTGGATTTGATCAAGAAGAAGTTGCAGGAATCAGGAGCACCTGTTACATCCTCTTCTGTTCCTACCCCATCAGTGCAACCAGGATCTGAATCAAATGGTTCAAAAGCAACCGACTCTACAGCTAAGAGCCTGCAAAATGATAACAGTAAAGATAAACAGAAAGATGCTAATGGTGATGCTAATGTCACTGATACATCTTCAGATTCAGAAGATGAGGATAGCGGGCCTTCAAAAGAGGAATGCATAAATCAATTTAAGGAGATGCTTAAGGAACGAGGTGTGGCACCATTCTCAAAGTGGGAGAAAGAACTACCAAAGATAGTATTTGATCCCCGTTTTAAGGCTATCCCTAGTTATTCTGCTAGGAGATCCTTGTTTGAACATTATGTTAAAACTCGCGCGGAAGTAGAACGCAAAGAAAAGCGTGCTGCACAGAAGGCTGCAATTGAGGGATTTAAGCAGTTATTAAATGAAGCCTCAGAGGATATAAATGACAATACTGATTATCACACTTTTCAAAAGAAATGGGGAAACGATCAACGGTTTGAAGCATTGGACCGCAAGGAACGGGAGCATCTTCTTAACGAAAGAGTGCTTCCCTTGAAGAAAGCTGCTGAAGAAAAAGCTCAAGCAAGACGTGATGCTGCTTCTGCCAGTTTTAAATCAATGCTTAAAGAGCAAGGAGATATCACTTTTAACTCCCGTTGGTCCAAGGTTAAAGAGAGTTTAAGAGATGATTCGAGATATAAATCTATAAAACACGAGGATAGGGAATTTTTGTTCAATGAGTATATATCCGAGTTAAAAGCTGCTGAACATGCAGCAGAACGAGAGACCAGAGCTAAAAAGGATGAGCAGGAGAAGTTGCGGGAAAGGGAGCGGGAGTTGCGTAAAAGGAAGGAAAGAGAAGAACATGAAATGGAAAAAGTACGAATAAAGATTAGAAGGAAGGAGGCAGTTACTTCTTTTCAAGCTTTACTCGTGGAGAGAATCAAAGACCCTATGGCGTCATGGACAGAATCAAAGCCCAAGATAGAAAAAGATCCGCAAGGACGTGCAACCAATTCTGTTCTTGATTCAACTGACATGGAAAAACTCTTCTGGGATCATATAAAGATGCTTCAGGAACGTTGTGCTCACGATTTTAAAGCTCTTCTAGCTGAAGTCTTGACTTCTGAAGCCGCATCTCGGGAAACTGAAGATGGAAAAACAGTACTGAATTCGTGGTCTACAGCAAAACGTCTTTTAAAACCCGATCCAAGATATAACAAGGTTCAAAGAAAAGATAGAGAAGCCTTGTGGCGCCGGTATGCAGAGGACATGCTGCGTCGGCAAAAGTCTTCTCATGATTCAAAGGAAGATAAATATTTAGATGCCAGAGGTAGAAAGTCTCTAGAATCTTCCAAACATACATCAGAATCAGGAAGATTGCACGAGAGAAGATAA | 2865 | 0.4387 | MAQQPLSTETPNSSSATPASSSPAPPISYGVHQNVNVSGNSHQLSSHSGMKPNSAVNPPHMSVQPPVHGLPPHAAAPSFLYNTPHSVPVFTGNQHAQSTTNMPDSGTQDFSKMSSASSNQHPVPALTSTSPMPPPSDPNYRPTTLWMPAVPSFPVHPVMPGAPGPPGLAKPVRIPSNPAVPPPSTEFSSAAALRQNIPTGPIALDPNASHQGLPYPSLPSMVAPPQGFWLQPPQMSGIPRPPFHQYPAAFPGPFPFPARGVTLPTVPVPDSQPPGVTPVGPVGISTFSASSHQLRGTPSLQAEVISAHADDKKLNAIMTQNEDAANDQLDAWTAHKSEAGIVYYYNVVTRESTYNKPAGFKGEAHQVSGQPTPVSMVDLPGTDWQLVSTSDGKKYYYNKQTKTSCWQVPIEVAELKKKQDGDVTKDSLMPVPNTNSSSDRGSGMVALNAPAIITGGRDAAAPKPSSVQSSPSALDLIKKKLQESGAPVTSSSVPTPSVQPGSESNGSKATDSTAKSLQNDNSKDKQKDANGDANVTDTSSDSEDEDSGPSKEECINQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEVERKEKRAAQKAAIEGFKQLLNEASEDINDNTDYHTFQKKWGNDQRFEALDRKEREHLLNERVLPLKKAAEEKAQARRDAASASFKSMLKEQGDITFNSRWSKVKESLRDDSRYKSIKHEDREFLFNEYISELKAAEHAAERETRAKKDEQEKLRERERELRKRKEREEHEMEKVRIKIRRKEAVTSFQALLVERIKDPMASWTESKPKIEKDPQGRATNSVLDSTDMEKLFWDHIKMLQERCAHDFKALLAEVLTSEAASRETEDGKTVLNSWSTAKRLLKPDPRYNKVQRKDREALWRRYAEDMLRRQKSSHDSKEDKYLDARGRKSLESSKHTSESGRLHERR | 954 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi5g02991 | 954 | SUPERFAMILY | FF domain | 680 | 744 | IPR036517 | - | |
| Vivi5g02991 | 954 | SUPERFAMILY | FF domain | 610 | 679 | IPR036517 | - | |
| Vivi5g02991 | 954 | Gene3D | FF domain | 847 | 913 | IPR036517 | - | |
| Vivi5g02991 | 954 | Gene3D | FF domain | 786 | 846 | IPR036517 | - | |
| Vivi5g02991 | 954 | ProSiteProfiles | FF domain profile. | 686 | 740 | IPR002713 | - | |
| Vivi5g02991 | 954 | FunFam | Pre-mRNA-processing protein 40C | 678 | 752 | - | - | |
| Vivi5g02991 | 954 | Coils | Coil | 741 | 793 | - | - | |
| Vivi5g02991 | 954 | MobiDBLite | consensus disorder prediction | 482 | 552 | - | - | |
| Vivi5g02991 | 954 | ProSiteProfiles | FF domain profile. | 551 | 605 | IPR002713 | - | |
| Vivi5g02991 | 954 | MobiDBLite | consensus disorder prediction | 418 | 443 | - | - | |
| Vivi5g02991 | 954 | Gene3D | - | 327 | 367 | - | - | |
| Vivi5g02991 | 954 | ProSiteProfiles | FF domain profile. | 618 | 673 | IPR002713 | - | |
| Vivi5g02991 | 954 | PANTHER | TRANSCRIPTION ELONGATION REGULATOR 1 | 42 | 951 | IPR045148 | GO:0003712|GO:0070063 | |
| Vivi5g02991 | 954 | FunFam | pre-mRNA-processing protein 40C isoform X1 | 536 | 613 | - | - | |
| Vivi5g02991 | 954 | ProSitePatterns | WW/rsp5/WWP domain signature. | 384 | 409 | IPR001202 | GO:0005515 | |
| Vivi5g02991 | 954 | MobiDBLite | consensus disorder prediction | 484 | 517 | - | - | |
| Vivi5g02991 | 954 | CDD | WW | 332 | 357 | IPR001202 | GO:0005515 | |
| Vivi5g02991 | 954 | SUPERFAMILY | WW domain | 331 | 362 | IPR036020 | GO:0005515 | |
| Vivi5g02991 | 954 | MobiDBLite | consensus disorder prediction | 92 | 138 | - | - | |
| Vivi5g02991 | 954 | MobiDBLite | consensus disorder prediction | 1 | 67 | - | - | |
| Vivi5g02991 | 954 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 384 | 411 | IPR001202 | GO:0005515 | |
| Vivi5g02991 | 954 | MobiDBLite | consensus disorder prediction | 747 | 767 | - | - | |
| Vivi5g02991 | 954 | FunFam | Pre-mRNA-processing protein 40C isoform C | 614 | 677 | - | - | |
| Vivi5g02991 | 954 | FunFam | Pre-mRNA-processing protein 40C | 786 | 846 | - | - | |
| Vivi5g02991 | 954 | SMART | FF_2 | 618 | 673 | IPR002713 | - | |
| Vivi5g02991 | 954 | SMART | FF_2 | 551 | 605 | IPR002713 | - | |
| Vivi5g02991 | 954 | SMART | FF_2 | 789 | 846 | IPR002713 | - | |
| Vivi5g02991 | 954 | SMART | FF_2 | 686 | 740 | IPR002713 | - | |
| Vivi5g02991 | 954 | SUPERFAMILY | FF domain | 546 | 611 | IPR036517 | - | |
| Vivi5g02991 | 954 | MobiDBLite | consensus disorder prediction | 915 | 954 | - | - | |
| Vivi5g02991 | 954 | ProSiteProfiles | FF domain profile. | 789 | 846 | IPR002713 | - | |
| Vivi5g02991 | 954 | SMART | ww_5 | 379 | 411 | IPR001202 | GO:0005515 | |
| Vivi5g02991 | 954 | SMART | ww_5 | 327 | 359 | IPR001202 | GO:0005515 | |
| Vivi5g02991 | 954 | Pfam | WW domain | 382 | 409 | IPR001202 | GO:0005515 | |
| Vivi5g02991 | 954 | Pfam | WW domain | 331 | 357 | IPR001202 | GO:0005515 | |
| Vivi5g02991 | 954 | CDD | WW | 382 | 411 | IPR001202 | GO:0005515 | |
| Vivi5g02991 | 954 | MobiDBLite | consensus disorder prediction | 92 | 126 | - | - | |
| Vivi5g02991 | 954 | SUPERFAMILY | FF domain | 781 | 851 | IPR036517 | - | |
| Vivi5g02991 | 954 | Gene3D | FF domain | 679 | 750 | IPR036517 | - | |
| Vivi5g02991 | 954 | Gene3D | FF domain | 537 | 607 | IPR036517 | - | |
| Vivi5g02991 | 954 | Gene3D | - | 368 | 426 | - | - | |
| Vivi5g02991 | 954 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 326 | 359 | IPR001202 | GO:0005515 | |
| Vivi5g02991 | 954 | MobiDBLite | consensus disorder prediction | 428 | 443 | - | - | |
| Vivi5g02991 | 954 | SUPERFAMILY | WW domain | 379 | 411 | IPR036020 | GO:0005515 | |
| Vivi5g02991 | 954 | ProSitePatterns | WW/rsp5/WWP domain signature. | 332 | 357 | IPR001202 | GO:0005515 | |
| Vivi5g02991 | 954 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - | |
| Vivi5g02991 | 954 | FunFam | Pre-mRNA-processing protein 40C | 848 | 913 | - | - | |
| Vivi5g02991 | 954 | Pfam | FF domain | 621 | 669 | IPR002713 | - | |
| Vivi5g02991 | 954 | Pfam | FF domain | 792 | 843 | IPR002713 | - | |
| Vivi5g02991 | 954 | Pfam | FF domain | 689 | 737 | IPR002713 | - | |
| Vivi5g02991 | 954 | Pfam | FF domain | 555 | 602 | IPR002713 | - | |
| Vivi5g02991 | 954 | SUPERFAMILY | FF domain | 847 | 919 | IPR036517 | - | |
| Vivi5g02991 | 954 | Gene3D | FF domain | 608 | 678 | IPR036517 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vivi5g02991 | Vivi-Chr5 | 118270533 | 118285773 | Tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi5g02991 | K12824 | - | gmx:100815386 | 1318.52 |