Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02984 ATGGCTTCCGCATCCTCCAAAACCCTAACCGATTTTTTCAACCGAGCTCCCAAACGCTTGAAACCCACTCTCACCACTATCTGCAAATCCGAAGATACCACCCATGCCTCCTCCACCCTCTCCGTCGACCAAAAATCTCGCATCGAATTCAATAAGAGCCTCGCTCTGTCCAAACGAAACCTCAAAATCTGCATCGACAGGATTTCCAAACACAAAGAATCTTCAGTTGCGGGTTGCGTGAAACTAGAAGAGTTGCTTGTGGAGGAATCGTGGTTGGAGGCTTTATCTGGAGAATTTCAGAAATCGTATGCCGTTAATCTTTCGAAGTTCGTTGAAACGGAGATTTGTTCTACTAGAGATGATTCTGTGTATCCTCCTCAGCATTTGATCTTCAATGCTCTTAACACTACTCCTTTTCATTCTGTTAAGGCCGTGATACTTGGCCAGGATCCTTATCATGGACCTGGTCAAGCAATGGGGCTTTCGTTCTCTGTACCGGAGGGAATCAAAGTTCCATCTAGTTTGGTAAATATATTTAAGGAGCTCAAGCAAGACCTTGGCTGTTCAATTCCATCTCAGGGTAATCTTGAAAAATGGGCCGTGCAGGGCGTTCTCTTACTCAACGCTGTTCTCACAGTCAGGAAGCACCAAGCAAATTCTCATGCAAAAAAAGGCTGGGAACAATTTACTGATGCTGTTATCAAGACAATCTCGCAGAAGAAAGAAGGGGTTGTGTTTCTGCTGTGGGGAAAGTCTGCTCAGGAGAAACTTAGGTTAATTGATGCAACCAAGCATCACATTCTAAAAGCGGCACATCCTTCTGGTTTATCTGCACATAGAGGCTTCTTTGGCTGCAAGCACTTCTCTCAAACTAACCAACATCTGAAGCAAATGGGGATAAGTCCCATAGATTGGCAACTATAA 924 0.4448 MASASSKTLTDFFNRAPKRLKPTLTTICKSEDTTHASSTLSVDQKSRIEFNKSLALSKRNLKICIDRISKHKESSVAGCVKLEELLVEESWLEALSGEFQKSYAVNLSKFVETEICSTRDDSVYPPQHLIFNALNTTPFHSVKAVILGQDPYHGPGQAMGLSFSVPEGIKVPSSLVNIFKELKQDLGCSIPSQGNLEKWAVQGVLLLNAVLTVRKHQANSHAKKGWEQFTDAVIKTISQKKEGVVFLLWGKSAQEKLRLIDATKHHILKAAHPSGLSAHRGFFGCKHFSQTNQHLKQMGISPIDWQL 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02984 307 CDD UDG-F1-like 103 305 IPR002043 GO:0004844|GO:0006281|GO:0006284
Vivi5g02984 307 Hamap Uracil-DNA glycosylase [ung]. 88 306 IPR002043 GO:0004844|GO:0006281|GO:0006284
Vivi5g02984 307 Gene3D - 68 307 IPR036895 -
Vivi5g02984 307 SUPERFAMILY Uracil-DNA glycosylase-like 85 307 IPR036895 -
Vivi5g02984 307 SMART UDG_2 135 295 IPR005122 -
Vivi5g02984 307 SMART UDG_2_a 135 295 - -
Vivi5g02984 307 Pfam Uracil DNA glycosylase superfamily 139 292 IPR005122 -
Vivi5g02984 307 PANTHER URACIL-DNA GLYCOSYLASE 30 307 IPR002043 GO:0004844|GO:0006281|GO:0006284
Vivi5g02984 307 ProSitePatterns Uracil-DNA glycosylase signature. 143 152 IPR018085 GO:0006281|GO:0016799
Vivi5g02984 307 NCBIfam uracil-DNA glycosylase 89 299 IPR002043 GO:0004844|GO:0006281|GO:0006284
Vivi5g02984 307 FunFam Uracil-DNA glycosylase 81 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02984 Vivi-Chr5 118170119 118173927 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02984 K03648 - gmx:100818241 476.863