Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02981 ATGGCAAGCATTCCTGGAAAATTTGCTCCTTCTAATGGGTCTATCTATGTATGCAACCTGCCTCATGGGACCGACGATAATATGTTGGCTGAATATTTTGGTACCATTGGAGTAATAAAGAAAGATAAACGTACAGGAAGACCTAAAATATGGTTATATCGGGACAAAGAGACTAATGAACCAAAGGGAGATGCTACTGTGACATATGAGGATCCGCATGCTGCCGTGGCTGCTGTTGAATGGTTTAACAACAAAGATTTTCATGGAAATGCAATTGGAGTTTATATAGCTGAGTCTAAAAACAAGGATGACCAAACTTATAATTCAATAGCAGATCCGGTTGTTGCTGGTGATATTGTTGGACCAGAAGAAACTGAAACTGATGTTAATGGTGTTAATGGGGGAGGTATAGGTCAAATTGATGCTTCCAGCAAACCATGGCAACAAGAGGGCGATTGGATGTGTCCGAATACAAGTTGCTCCAATGTGAATTTTGCTTTTCGTGGTGCGTGTAATCGCTGTGGAAGTGCACGCCCTGCTGGTGCTTCTGGCGTTGCAGGAGGAGGTGGCCGTGGCAGGGGACGTTCTGGGCAAGATTCAGGGGGTATTGGCCGTCCAGCTGGTGCAACTGCAGGACTATTTGGTCCCAATGACTGGTCTTGTCCAATGTGTGGCAATATCAATTGGGCAAAGCGGTTAAAATGCAATATTTGCAATACAAATAAGCCTGGGCACAACGAGGGTGGTGTAAGGGGAGGGCGAGCTGGAGGTTACAAAGAGCTTGATGAAGAGGAAATTGAAGAAACTAAACGTCGTAGGCGGCAGGCTGAAGATGATGGTGAGCTGTATGATGAATTTGGAAACCTTAAGAAGAAATTCCGTGCCAAAACACAGCAATCTGAAGCTGCACGAGTGCTTCCTGGTTCAGGGCGTGCTGGTTGGGAGGTTGAGGATCTAGGGATTCACAGAGATGCTACAGAAAAAAGCAGAGACAGGGGAAGGGACCGTGATGATGGAGAGCATAGAAGCAGAGAGTCAATTGAGAAGGAGAGGCAAAGCAGTCGGAATAGAGAGAGGGACAGAGGAAGAGATCGAGACAGGGATTATGGGCGAGATCGGGACAGGAGTAGACACCGATATTAA 1143 0.4619 MASIPGKFAPSNGSIYVCNLPHGTDDNMLAEYFGTIGVIKKDKRTGRPKIWLYRDKETNEPKGDATVTYEDPHAAVAAVEWFNNKDFHGNAIGVYIAESKNKDDQTYNSIADPVVAGDIVGPEETETDVNGVNGGGIGQIDASSKPWQQEGDWMCPNTSCSNVNFAFRGACNRCGSARPAGASGVAGGGGRGRGRSGQDSGGIGRPAGATAGLFGPNDWSCPMCGNINWAKRLKCNICNTNKPGHNEGGVRGGRAGGYKELDEEEIEETKRRRRQAEDDGELYDEFGNLKKKFRAKTQQSEAARVLPGSGRAGWEVEDLGIHRDATEKSRDRGRDRDDGEHRSRESIEKERQSSRNRERDRGRDRDRDYGRDRDRSRHRY 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02981 380 SMART rrm1_1 14 95 IPR000504 GO:0003723
Vivi5g02981 380 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 99 IPR000504 GO:0003723
Vivi5g02981 380 Gene3D - 214 245 - -
Vivi5g02981 380 Gene3D - 145 182 - -
Vivi5g02981 380 ProSiteProfiles Zinc finger RanBP2 type profile. 215 244 IPR001876 -
Vivi5g02981 380 FunFam Zinc finger Ran-binding domain-containing protein 2 210 244 - -
Vivi5g02981 380 ProSiteProfiles Zinc finger RanBP2 type profile. 149 180 IPR001876 -
Vivi5g02981 380 MobiDBLite consensus disorder prediction 314 380 - -
Vivi5g02981 380 SUPERFAMILY RNA-binding domain, RBD 10 102 IPR035979 GO:0003676
Vivi5g02981 380 FunFam HIV Tat-specific factor 1 12 96 - -
Vivi5g02981 380 Pfam Zn-finger in Ran binding protein and others 218 244 IPR001876 -
Vivi5g02981 380 Pfam Zn-finger in Ran binding protein and others 150 179 IPR001876 -
Vivi5g02981 380 MobiDBLite consensus disorder prediction 182 208 - -
Vivi5g02981 380 CDD RRM_SARFH 15 97 - -
Vivi5g02981 380 Coils Coil 259 279 - -
Vivi5g02981 380 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 124 376 - -
Vivi5g02981 380 ProSitePatterns Zinc finger RanBP2-type signature. 153 174 IPR001876 -
Vivi5g02981 380 SUPERFAMILY Ran binding protein zinc finger-like 210 245 IPR036443 -
Vivi5g02981 380 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 92 IPR000504 GO:0003723
Vivi5g02981 380 ProSitePatterns Zinc finger RanBP2-type signature. 219 238 IPR001876 -
Vivi5g02981 380 FunFam TATA-binding protein-associated factor 2N isoform X1 147 181 - -
Vivi5g02981 380 SMART zf_4 217 241 IPR001876 -
Vivi5g02981 380 SMART zf_4 151 177 IPR001876 -
Vivi5g02981 380 MobiDBLite consensus disorder prediction 244 283 - -
Vivi5g02981 380 Gene3D - 12 95 IPR012677 -
Vivi5g02981 380 SUPERFAMILY Ran binding protein zinc finger-like 144 181 IPR036443 -
Vivi5g02981 380 MobiDBLite consensus disorder prediction 256 283 - -
Vivi5g02981 380 MobiDBLite consensus disorder prediction 316 380 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02981 - - aip:107628735 527.324