Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02975 ATGACAAAGCCTTGTGATTTGCAAATCAAAATTAATGGTCAACAGATATTTCTTTTGAAAGAGAAGATCATATCAAAATACTGTGGAAAGGTGAAGAAAATCTTGAATCATCAAAAGAGAAGATGTCATGTGAAGGAGATGGGAATTAGGATCAATGATTTCCCTGGAGGCTCAGATGGGTTTGAGTTAGTTTCAAGGTTTTGTTACAACAATGGCAAAATACCAATTGATGTAGCTAATGTGTCTCTTCTTCATTGCTGTGCTATTTATCTTGGAATGACTGAGGAAGTTTGCAACAATAATCTATTGCAACAGACACAAACTTTTCTTGAGGGAATCCATTACTGGAAATGGAATGACATGGTTTTAAGTCTAATGAGTTGCCGAATGTTTTATGAATATGCAGATTGTTATGGTCTCTTGGAGAAGATCATTAGTGCAGTGTTAACAAAGATTGTGCGAAATTCAGATGCAAACCTTAACATTTCGTTTACCTCTTTATCATCCTCGTCACCGTCGTCGTCGTCAACACTGTCTTCACCGGAAAGCAATTATGCCAAGAGATTTTCTTCTTCAACACAGACTACATCAGAAAAAGCCAAGTCGAGTTTGACAAGCAAAGCATGGTGGTTTGAAGATTTGGAAACATTACCGCCAAAGATAATTGAGAAACTTTTTCAGTGTATTGAATCATACAAAGATGATAACAACAGTTTAATCTTTACAAGATTTCTGTTGCAGTATCTGAAAACAGCTACTCAAACCAGAAACGCCGATTGTAGAAACAACAGCGAGTATGCTGCTCTTGCAGAAACAGCTGCTTATGGAGTCATATTTGTTGGTAAGAAAAACTTCTCTTGCAGAGGACTTTTTTGGGTGTTAAGGATTGTTTCCAGATTCGGGTTGAGTAAAATTTGCAGAACTGAGCTAGAGAAATTGATTGGTGGGATGCTCGAACAAGCAACGCTGGATGATCTTTTGGTCTCAGGACAAGATATCGGGATCTATTATGATGTTAACTTGGTGATAAGATTGGTTAAACAATTTGTTGATACCAATGGTTATGATGGAATGTGTTTGCAGAAAATGAAAAGGGTTGGTAGATTAATCGACAAGTATTTGAGAGAGATATCACCTGATCAGAATCTCAAGATCGCTAAATTTCTCGGAGTTGCAGAATGTTTGCCTGACTTCGCAAGGGATTGCTTTGATGGGATCTACAGAGCCATTGATATCTATCTTGAGTCTCATCCAAATGTCCCATTTGAGGAAAGATCAAGATTGTGTAAATGTCTTAACTACAGTAAACTCAGCTTTGGAGCTAGTAAAGATCTTGCCAAGAATCCCAGAATACCTCCAATGGTTGCAATGCAGGCACTTATTTCTCAACAAACAAAAATTCCAACGACCAACTTTGTAACCGAGAGTCCACGAAAAAGCCGTTCGCAAATAGTTCTGTATAATGAAGGTACCATTGACAGCTTCTCTCAAGAGAAAAAACAGATGAAACTAAACCTGGAGATATTGAAATGTAAGGCAGTAAAAGTAGAGAAATTAGAAGAAATGAATGGTCAGATTTCGAATATGTTTAGCCGAAATGTCTTGCTCACTCCTGCTCTTGCTAGAGCCTCGCCAAGATACTGTTGA 1647 0.3777 MTKPCDLQIKINGQQIFLLKEKIISKYCGKVKKILNHQKRRCHVKEMGIRINDFPGGSDGFELVSRFCYNNGKIPIDVANVSLLHCCAIYLGMTEEVCNNNLLQQTQTFLEGIHYWKWNDMVLSLMSCRMFYEYADCYGLLEKIISAVLTKIVRNSDANLNISFTSLSSSSPSSSSTLSSPESNYAKRFSSSTQTTSEKAKSSLTSKAWWFEDLETLPPKIIEKLFQCIESYKDDNNSLIFTRFLLQYLKTATQTRNADCRNNSEYAALAETAAYGVIFVGKKNFSCRGLFWVLRIVSRFGLSKICRTELEKLIGGMLEQATLDDLLVSGQDIGIYYDVNLVIRLVKQFVDTNGYDGMCLQKMKRVGRLIDKYLREISPDQNLKIAKFLGVAECLPDFARDCFDGIYRAIDIYLESHPNVPFEERSRLCKCLNYSKLSFGASKDLAKNPRIPPMVAMQALISQQTKIPTTNFVTESPRKSRSQIVLYNEGTIDSFSQEKKQMKLNLEILKCKAVKVEKLEEMNGQISNMFSRNVLLTPALARASPRYC 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02975 548 MobiDBLite consensus disorder prediction 166 191 - -
Vivi5g02975 548 Coils Coil 492 512 - -
Vivi5g02975 548 ProSiteProfiles NPH3 domain profile. 208 466 IPR027356 -
Vivi5g02975 548 Pfam NPH3 family 209 441 IPR027356 -
Vivi5g02975 548 PANTHER OS12G0117600 PROTEIN 4 521 IPR043454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02975 Vivi-Chr5 118112478 118114708 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02975 6 470 EF-hand Containing Proteins AT3G44820 27.921 1.92e-49 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02975 - - gmx:100808259 797.734