Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02947 ATGGAAACTCGTAGTCGGAAGCGGGCGGAGGCTTCCTCAGCTGCCCCTTCATCTTCTTCATCTAGTCCTAAAACTCGTCCTAACAAGCGTTCTCGTCTTTCTTCTTCCACTTCCACGTCTTCCGCCACCGCAACAACAACCGCAGTCGCTACCACTCCTATTCGGTCTGTCAACACTCGTACACGCGCGTCTAGAAACAAAGAAGCCTTGCCGTCTAAGAATCTTCCTCCTATGGATTCCAACAATGAATCGTCGTCTGCTTCGAGACGGGATCGTCGTGGCAAGAATTCGGAAAGGGATGGCTCTGATAAGGGGAAGGAGAAGGAGCATGATGTTAGGATTAGGGAGAGGGATGCGGAAAGAGGGTTGGCGTTGAATATGGAAGCTGGTGCTGGGGATGAGGATGATAATGATAGTGACAGTGGTGCTGGGCTGTTGCATCAGAATTTAACGTCTGCTAGTAGTGCACTCCAGGGGCTTCTTAGGAAACTTGGTGCTGGTTTGGATGATCTGCTTCCGTCGTCTGGGATGGGTTCTTCCTCTCATCAGAATGGGAGGTTGAAGAAGATCCTGTTTGGGCTTCGGGCTGATGGGGAAGAAGGTCGACAGGTTGAGGCTTTGACGCAGCTGTGTGAAATGCTTTCGATTGGGACTGAGGATTCACTTAGTACTTTCTCTGTTGATTCGTTTGTACCTGTCCTCGTTGGGTTGCTGAATCATGAGAGCAATCCTGATATCATGCTTCTCGCAGCAAGGGCGCTGACACATCTCTGTGACGTGCTCCCTTCGTCTTGTGCAGCTGTTGTGCATTATGGAGCTGTTTCAATTTTCTGTGCGAGGTTGCTCACTATAGAGTATATGGATTTGGCCGAGCAGTCCCTTCAAGCTCTAAAGAAGATATCTCAGGAGCACCCAACTGCCTGCCTAAGAGCTGGGGCTCTCATGGCCGTACTCTCTTATTTGGACTTCTTCTCAACTGGAGTTCAGCGTGTTGCTTTGTCTACTGCTGCTAACATGTGCAAGAAGCTTCCTTCAGATGCAGCTGATTTTGTAATGGAGGCTGTTCCTCTTCTGACGAACCTCCTCCAGTACCATGATTCCAAGGTCCTGGAGCATGCCTCTGTTTGTTTGACTCGAATAGCTGAAGCATTTGCATCATCTTCGGATAAATTAGATGAATTATGCAATCATGGACTTGTAACACAAGCTGCCTCCCTCGTTTCAAACAGCAGTTCTGGAGGTGGGCAAGCTTCTCTCAGTACTCCAACATATACTGGTTTAATCCGACTTCTTTCAACTTGTGCAAGCGGGTCCCCTCTTGGAGCTAAAACTTTGCTGCTGCTTGGAATTAGTGGTATTCTTAAAGATATTCTCTCTGGTTCTGGAGTTTCTTCTAATACCTCTGTTTCTCCTGCATTAAGTAGGCCACCGGAGCAGATATTTGAGATTGTAAATCTGGCAAATGAGCTTCTCCCCCCATTGCCACAAGGGACTATTTCCCTTCCTGTCAGCACCAACTTTGTGAAGGGGCCTGTTATAAGAAAGTCACCTGCCGGTAGTTCTGCGCAACAAGAAGACACAAACGGAAATCCTCCTGAGATATCAGCCCGTGAAAAGCTATTAAATGAACAGCCTGAGCTACTTAAGCAATTTGGGATGGATCTCCTCCCAGTTTTAATACAGATTTATGGTTCTAGTGTCAATATACCTGTTCGGCACAAATGTCTTTCGGCCATTGGAAAGTTGATGTATTTCAGCACATCAGAGATGATCCAGTCTTTGTTAAGCATGACAAATATATCAAGTTTCTTAGCTGGAGTCTTGGCATCAAAAGATCCACATGTATTGACACCTGCCTTGCAAATTGCTGAGATTTTAATGGAAAAGCTGCCTGAGACATTCTCTAAGATGTTTATCAGAGAAGGTGTCGTTCATGCAGTGGATCTACTAATATTGCCTGGAAATTCGACCAGTGTCTCAACACAAGCATCTACTGCAGAGAAGGATACTGATTCTATACCTGGAGCATCATCTCGCGTTAGGCGTAATCGGCGACGCTCCGGCAACTCGAATCCTGATGGAAATCCTTTGGACGACACCAAGAGTCCTGTTTCAGTAAATGTTGGTTCACCTCCAAGTTCTGCAAATATTCCAACAGTAAATTCTAGTATCCGGTTATCTGTTAGTGCAGCTGCAAAAACTTTTAAAGATCAGTACTTTCCTTCGGATCCTGGGGCTGCTGAAGTGGGTGTTACAGAGGATCTTTTGCATCTGAGAAATCTTTGCATGAAGTTAAATGCCGGCGTTGATGACCAAAGGACTAATGGTAAGGGGAAATCTAAAACTTCTGGATTTGGTCTGGAGGAGTGTTTAACTGGTGTCATATCTGAAATGCTAAAGGAACTTGGCAAAGGAGATGGTGTATCAACTTTTGAATTTATTGGCAGTGGTGTTGTTGCAGCTTTGCTGAATTATTTGTCTTGTGGGTATTTCTCTAAAGATAAGCCCTCAGAAACCCACCTGCCTAAGCTTCGCAAACAAGCACTTGCAAGATTTAAGTTATTTATTACTGTTGCACTGCCTGCCACTATTGACAATGAGGATGTAACTCCTATGACCGTCTTGGTTCAAAAGCTTCAAAATGCTTTGTCCTCAATGGAGCGTTTCCCTGTTTTGCTGAGTCAATCACCTAGGTCATCCAGTGGAAGTGCACGCCTTTCCTCTGGACTTAGTGCATTATCCCAGCCCTTCAAATTGCGTCTTTGTCGAGCCCAGGGGGAAAAGTCACTTAAGGATTATTCAGGCAATGTTGTATTGATTGATCCATTAGCTAGTTTAGCAGCCATTGAAGAATTTCTTTGGCCTCGTATCCAGCGAAGTGAATCTGCTCAGAAGTCCAATGCACCTGCTGGGAATTCTGAATCTGGGACAAGTCCTGTAGGAGCTGGTGTTCCACCTCCTTCTACCTCTACTCCATCCACTACCCGTCGTCATTCTACGAGATCGAGATCTTCTGCTAGTTTAGGGGATACCACCAGAAAAGAATTAACTCAAGATAAAACCTTGAGCTCATCTAAGGGTAAGGGAAAAGCTGTATTAAAGCCTGCACAAGAGGCGTCAAGAGGACCTCAAACAAGGAATGCTGCACGCAGAAGAGCAGCTGTTGATAAGGATGTTCAAATGAAGCCTGCAAATGGGGATTCTACTTCTGAGGATGAAGATTTAGATACATCTCCTGTTGAAATTGATGAGGCTTTGGTTATCGAAGATGATGATGATATTTCTGATGATGAAGATGATGACCACGAAGATATGCTGAGGGACGACTCACTTCCCGTTTGCTTACCTGACAAAGTACATGATGTGAAATTAGGCGACTCAGCTGAGGAGAGTACTGTTACTCCTTCAACTAACGATGGCCAGGCTAATGCGGCTTCTGGTTCTAGTAGCAAAGTTGGTTCAGTCAGGGCATCAGACACTGCAGATTTTAGGAGTGGCTATTCTTCTAGTTCACGAGGTGCTATGTCATTTGCTGCTGCTGCCATGGCTGGACTTGGATCTGCCAATAGCAGAGGAATCAGGGGTGGTAGAGATCGGCAAGGGCGTCCATTGTTTGGTAGTTCTAATGATCCTCCGAAGCTAATATTCACTGCTGGCGGGAAACAACTCAGCAGGCAGTTGACTATATATCAAGCAGTTCAAAGACAGCTTGTACAAGATGAAGACGACGATGAGAGATTTGCTAGTAGTGACTTTATGTCGAGTGATGGAAGCAGGATGTGGGGTGATATTTTCATAATAAATTATCAGAAGGCAGATAGCCAAACAGATAGGGCTACCCCAGGAGGCCCAAGTTCTAACACTTCAAAATCTAGTAAATCTGGGTCTGTATCAAATTGCAGTGCTGAAGTCAAGTTGCATCAGACATCTTTAATCGATAGTATCTTGCAGGGAGAATTACCGTGTGAGCTGGAGAAATCTAATCCCACATATGATATATTGGCTCTATTGCGTGTGCTGGAGAGTTTAAACCAGCTCGCACCTCGTTTGAGGGCGCAAGTGGCTACCGATAGCTTTGCTGAGGGAAATTTTTTGGATCTAGATGAACTAGTTGTTGCCACAGGTTCTAAGGTTCCTCCGGATGAATTTATAAGCAGCAAGCTTACTCCAAAACTAGCTAGGCAGATACAAGATGCCCTTGCCCTATGCAGTGGGAGTCTCCCCTCATGGTGTTACCAGTTAACTAAAGCATGTCCTTTTTTGTTTCCATTTGAGGTCCGAAGACAGTACTTCTATTCAACTGCCTTTGGGTTATCGCGTGCATTGTATCGACTCCAGCAGCAGCAGGGTGCCGATGGTCATGGATCAACAAACGAAAGAGAGGTTAGGGTTGGAAGGCTGCAGCGCCAAAAGGTCCGTGTCTCTCGAAATCGCATTTTGGATTCTGCTGCTAAAGTGATGGAAATGTATTCTAGCCAAAAGGCTGTACTTGAAGTAGAATATTTTGGTGAAGTTGGCACTGGCCTTGGTCCCACCCTTGAGTTCTATACACTTCTAAGTCATGACTTACAAAAAGTTGGACTTCAGATGTGGAGATCGGGTTCTGATCAAATGGAAATTGATGGAGATGAGAAGAAAAAGAAAAGCAGTGAAGGCAATATTGCTAGAGACGGGGAACTTGTTCAAGCTCCTCTTGGGTTGTTTCCTCGTCCCTGGCCTGCAAATGCCGAAGCATCAGAAGGTAGCCAGCTTTTTAAAGTGATTGAATATTTCAGACTTTTAGGCCGTGTAGTTGCTAAAGCACTTCAAGATGGACGTCTATTAGATTTGCCGTTATCTGTAGCCTTTTATAAGCTTGTTCTTGGTCAGGATCTTGATTTGCACGACATTCTTTACATCGATGCTGAACTTGGGAAAACTTTGCAAGAGTTGAATGCCCTTGTTTGCCGGAAACATAATATAGAATCTATTGGTGGTGGTTATACTGGTACAGTAGCAAATTTGCATTACCGCGGAGCTCCAGTTGCAGATCTCTGTTTGGATTTTACCCTTCCTGGTTATCCAGATTACACTTTGAAGCCTGGGGATGAAATTGTCGACCTCAATAATCTAGAGGATTATATATCCATGGTTGTTGATGCCACTGTCAAGACTGGAATAACACGGCAATTGGAAGCCTTTAGAGCAGGGTTCAATCAGGTTTTTGACGTCTCATCTTTGCAAATATTTACGCCTCACGAATTGGATTATTTGCTTTGTGGCCGTCGAGAATTATGGAAGACAGAGACACTAGCTGATCATATAAAATTTGACCATGGGTATACTGCCAAGAGCCCCGCAATAGTGAATTTACTTGAAATCATGGGAGAGTTCACACCGGAGCAGCAGCGTGCCTTCTGTCAATTTGTTACTGGAGCACCTAAGCTACCACCTGGTGGATTGGCTGTTCTAAATCCAAAGTTAACTATTGTGAGAAAGCTCTCGTCAACTGCAGCCAATACTGCATCCAATGGGAACGGTCCTTCAGAAACAGCAGATGATGACTTGCCAAGTGTGATGACATGTGCAAATTACCTTAAGCTTCCTCCATATTCTACCAAGGAAATTATGCACAAGAAGCTAATGTATGCAATCAATGAAGGCCAGGGATCCTTTGATTTATCATGA 5667 0.4479 METRSRKRAEASSAAPSSSSSSPKTRPNKRSRLSSSTSTSSATATTTAVATTPIRSVNTRTRASRNKEALPSKNLPPMDSNNESSSASRRDRRGKNSERDGSDKGKEKEHDVRIRERDAERGLALNMEAGAGDEDDNDSDSGAGLLHQNLTSASSALQGLLRKLGAGLDDLLPSSGMGSSSHQNGRLKKILFGLRADGEEGRQVEALTQLCEMLSIGTEDSLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDSKVLEHASVCLTRIAEAFASSSDKLDELCNHGLVTQAASLVSNSSSGGGQASLSTPTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSGVSSNTSVSPALSRPPEQIFEIVNLANELLPPLPQGTISLPVSTNFVKGPVIRKSPAGSSAQQEDTNGNPPEISAREKLLNEQPELLKQFGMDLLPVLIQIYGSSVNIPVRHKCLSAIGKLMYFSTSEMIQSLLSMTNISSFLAGVLASKDPHVLTPALQIAEILMEKLPETFSKMFIREGVVHAVDLLILPGNSTSVSTQASTAEKDTDSIPGASSRVRRNRRRSGNSNPDGNPLDDTKSPVSVNVGSPPSSANIPTVNSSIRLSVSAAAKTFKDQYFPSDPGAAEVGVTEDLLHLRNLCMKLNAGVDDQRTNGKGKSKTSGFGLEECLTGVISEMLKELGKGDGVSTFEFIGSGVVAALLNYLSCGYFSKDKPSETHLPKLRKQALARFKLFITVALPATIDNEDVTPMTVLVQKLQNALSSMERFPVLLSQSPRSSSGSARLSSGLSALSQPFKLRLCRAQGEKSLKDYSGNVVLIDPLASLAAIEEFLWPRIQRSESAQKSNAPAGNSESGTSPVGAGVPPPSTSTPSTTRRHSTRSRSSASLGDTTRKELTQDKTLSSSKGKGKAVLKPAQEASRGPQTRNAARRRAAVDKDVQMKPANGDSTSEDEDLDTSPVEIDEALVIEDDDDISDDEDDDHEDMLRDDSLPVCLPDKVHDVKLGDSAEESTVTPSTNDGQANAASGSSSKVGSVRASDTADFRSGYSSSSRGAMSFAAAAMAGLGSANSRGIRGGRDRQGRPLFGSSNDPPKLIFTAGGKQLSRQLTIYQAVQRQLVQDEDDDERFASSDFMSSDGSRMWGDIFIINYQKADSQTDRATPGGPSSNTSKSSKSGSVSNCSAEVKLHQTSLIDSILQGELPCELEKSNPTYDILALLRVLESLNQLAPRLRAQVATDSFAEGNFLDLDELVVATGSKVPPDEFISSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFEVRRQYFYSTAFGLSRALYRLQQQQGADGHGSTNEREVRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVGLQMWRSGSDQMEIDGDEKKKKSSEGNIARDGELVQAPLGLFPRPWPANAEASEGSQLFKVIEYFRLLGRVVAKALQDGRLLDLPLSVAFYKLVLGQDLDLHDILYIDAELGKTLQELNALVCRKHNIESIGGGYTGTVANLHYRGAPVADLCLDFTLPGYPDYTLKPGDEIVDLNNLEDYISMVVDATVKTGITRQLEAFRAGFNQVFDVSSLQIFTPHELDYLLCGRRELWKTETLADHIKFDHGYTAKSPAIVNLLEIMGEFTPEQQRAFCQFVTGAPKLPPGGLAVLNPKLTIVRKLSSTAANTASNGNGPSETADDDLPSVMTCANYLKLPPYSTKEIMHKKLMYAINEGQGSFDLS 1888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02947 1888 Gene3D - 177 494 IPR011989 -
Vivi5g02947 1888 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 10 1888 IPR045322 GO:0006511|GO:0061630
Vivi5g02947 1888 Pfam HECT-domain (ubiquitin-transferase) 1518 1888 IPR000569 GO:0004842
Vivi5g02947 1888 MobiDBLite consensus disorder prediction 1273 1297 - -
Vivi5g02947 1888 Gene3D - 538 665 IPR011989 -
Vivi5g02947 1888 MobiDBLite consensus disorder prediction 1 123 - -
Vivi5g02947 1888 SUPERFAMILY ARM repeat 187 653 IPR016024 -
Vivi5g02947 1888 Gene3D Hect, E3 ligase catalytic domains 1410 1650 - -
Vivi5g02947 1888 MobiDBLite consensus disorder prediction 1070 1105 - -
Vivi5g02947 1888 MobiDBLite consensus disorder prediction 515 534 - -
Vivi5g02947 1888 ProSiteProfiles HECT domain profile. 1588 1888 IPR000569 GO:0004842
Vivi5g02947 1888 MobiDBLite consensus disorder prediction 660 717 - -
Vivi5g02947 1888 FunFam E3 ubiquitin-protein ligase UPL3 1411 1649 - -
Vivi5g02947 1888 SMART hect_3 1481 1888 IPR000569 GO:0004842
Vivi5g02947 1888 MobiDBLite consensus disorder prediction 10 65 - -
Vivi5g02947 1888 SMART arm_5 344 382 IPR000225 GO:0005515
Vivi5g02947 1888 SMART arm_5 301 341 IPR000225 GO:0005515
Vivi5g02947 1888 SMART arm_5 218 259 IPR000225 GO:0005515
Vivi5g02947 1888 MobiDBLite consensus disorder prediction 962 1113 - -
Vivi5g02947 1888 MobiDBLite consensus disorder prediction 1129 1169 - -
Vivi5g02947 1888 Gene3D Hect, E3 ligase catalytic domain 1760 1886 - -
Vivi5g02947 1888 MobiDBLite consensus disorder prediction 1126 1169 - -
Vivi5g02947 1888 FunFam HECT ubiquitin protein ligase family protein KAK 180 494 - -
Vivi5g02947 1888 CDD HECTc 1470 1883 IPR000569 GO:0004842
Vivi5g02947 1888 MobiDBLite consensus disorder prediction 689 717 - -
Vivi5g02947 1888 SUPERFAMILY Hect, E3 ligase catalytic domain 1462 1881 IPR035983 GO:0004842
Vivi5g02947 1888 MobiDBLite consensus disorder prediction 85 123 - -
Vivi5g02947 1888 FunFam Putative E3 ubiquitin-protein ligase HECTD1 1757 1887 - -
Vivi5g02947 1888 MobiDBLite consensus disorder prediction 1187 1212 - -
Vivi5g02947 1888 MobiDBLite consensus disorder prediction 962 1012 - -
Vivi5g02947 1888 MobiDBLite consensus disorder prediction 517 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02947 Vivi-Chr5 117493488 117503356 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02947 K10590 - gmx:100783336 2977.58