Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02943 ATGGCTTCCAAGAGAATAGTAAAAGAGCTCAAGGACTTGCAGAGAGATCCACCAACTTCATGCAGTGCAGGTCCTGTCGGCGAGGACATGTTTCATTGGCAGGCAACAATCATCGGTCCAAATGATAGTCCTTATGCTGGTGGTGTTTTCCTTGTTACCATTCATTTTCCTCCTGATTATCCCCTCAAACCTCCCAAGGTTGCATTCAGGACAAAGGTATTTCATCCAAACATTAACAGCAACGGAAATATTTGCCTCGACATACTCAAAGAACAATGGAGTCCCGCTCTTACAATATCCAAGGTGCTGCTCTCTATATGTTCTCTGCTAACGGATCCGAACCCCGATGACCCTCTTGTGCCTGAAGTTGCTCATATGTGCAAAACCGACAGAGTCAAGTACGAGTCTACTGCTAGAAGCTGGACTCAGAAGTTTGCCATGGGATAA 447 0.4564 MASKRIVKELKDLQRDPPTSCSAGPVGEDMFHWQATIIGPNDSPYAGGVFLVTIHFPPDYPLKPPKVAFRTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEVAHMCKTDRVKYESTARSWTQKFAMG 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02943 148 SUPERFAMILY UBC-like 2 147 IPR016135 -
Vivi5g02943 148 FunFam Ubiquitin-conjugating enzyme 28, E2 1 148 - -
Vivi5g02943 148 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 147 IPR000608 -
Vivi5g02943 148 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 29 135 - -
Vivi5g02943 148 Gene3D Ubiquitin Conjugating Enzyme 1 148 IPR016135 -
Vivi5g02943 148 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 74 89 IPR023313 -
Vivi5g02943 148 Pfam Ubiquitin-conjugating enzyme 5 141 IPR000608 -
Vivi5g02943 148 CDD UBCc 3 142 IPR000608 -
Vivi5g02943 148 SMART ubc_7 4 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02943 Vivi-Chr5 117447001 117448566 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02943 2 114 Miscellaneous Gene Families AT3G17000 35.294 3.04e-19 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02943 K06689 - gmx:100787053 308.145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g02943 5 117447001 117448566 Vivi5g02943 5 117447001 117448566 ECH