Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02938 ATGGCGGAAGAACACGAAATGGAGACTGAGACCGAGACCGAGCTTGAAGAAGAGTTTTCTGTTTGGAAGAGGAACACTCCTCTTCTGTACGATTTGTTCATTTCCCATCCTCTCTCATGGCCTTCCCTCACTGTTCAGTGGGTTCCCGCTTCTCCTCAACCCCACTCTCACCCTTCCTTCAACACCCACAAACTCCTCATAGCCACTCACACTTCCAACGAAGAATCCAACTACCTCATGTTCGCAGATTCAACACTCCCCGTAAACCCATCTCAACCCATCTTTTCTGAGGATCCCGAAAACCCCTTTCTTCCCAAGGTAGAGATTACTCAAAAGGTTCTTGTTGATGGTGAGGTGAATCGGGCGCGTTCTATGCCGCAGAACCCTAGCATTGTTGCTGCAAAGACTTGTAATTCTGAGGTTTTTGTGTTTGATTTTGCCAAGAAACGAGGTGATAGTAATGATCCTGATTTCAGGTTGAAGGGTCATGAAGAAGAAGGGTATGGTTTGTCTTGGAGTCCTTTTAAGAAAGGGTACCTTTTGAGTGGTTCTAATGACCATAAGATTTGTTTGTGGGATGTGTTTTCTGAATCTCAAAACAATGTGCTTGATGCTGTTCATGTTTACGAGGGCCATGAAAGTATTGTTGAAGATGTGTCTTGGCACACAAAGGATGAGAATTTGTTTGGGTCAGGTGGAGATGACTGCAGGTTGATAATTTGGGATTTGAGGACAAACAAAGCGCAACAATCACTCAAACCCCATGAAAGGGAGGTGAACTTTGTTTCTTTCAATCCCTATAATGAATGGATTTTGGCTACAGCATCTTCAGACACCACTGTTGGTCTCTTTGATATAAGGAAGCTTGAGGCGCCATTGCATTTTTTAAGTAGCCACACAGATGAAGTGTTCCAGGTAGAGTGGGATCCTAACCACGATGGCATATTGGCATCATCTAGTTCTGACAGAAGGCTGATGGTTTGGGATCTTAACAGAATTGGCGATGAGATGATAGAAGGAGACGAAGAGGGTGGTCCTCCTGAACTACTCTTCTCTCATGGGGGTCATAAAGGAAAAATATCAGATTTTTCATGGAACCAACACCAGCCATGGGTAATCTCAAGTGTAGCTGAGGATAATTCTTTCCACGTCTGGCAAATGGCTGAAAGCATTTACAATGATGGTGATGTTGATGACGATAACAGTTGGATGGGTATTGATCAGCACTAA 1230 0.4398 MAEEHEMETETETELEEEFSVWKRNTPLLYDLFISHPLSWPSLTVQWVPASPQPHSHPSFNTHKLLIATHTSNEESNYLMFADSTLPVNPSQPIFSEDPENPFLPKVEITQKVLVDGEVNRARSMPQNPSIVAAKTCNSEVFVFDFAKKRGDSNDPDFRLKGHEEEGYGLSWSPFKKGYLLSGSNDHKICLWDVFSESQNNVLDAVHVYEGHESIVEDVSWHTKDENLFGSGGDDCRLIIWDLRTNKAQQSLKPHEREVNFVSFNPYNEWILATASSDTTVGLFDIRKLEAPLHFLSSHTDEVFQVEWDPNHDGILASSSSDRRLMVWDLNRIGDEMIEGDEEGGPPELLFSHGGHKGKISDFSWNQHQPWVISSVAEDNSFHVWQMAESIYNDGDVDDDNSWMGIDQH 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02938 409 PANTHER WD40 REPEAT FAMILY 8 397 - -
Vivi5g02938 409 SUPERFAMILY WD40 repeat-like 119 387 IPR036322 GO:0005515
Vivi5g02938 409 Pfam WD domain, G-beta repeat 291 329 IPR001680 GO:0005515
Vivi5g02938 409 Pfam WD domain, G-beta repeat 350 385 IPR001680 GO:0005515
Vivi5g02938 409 Pfam WD domain, G-beta repeat 248 285 IPR001680 GO:0005515
Vivi5g02938 409 Pfam WD domain, G-beta repeat 206 242 IPR001680 GO:0005515
Vivi5g02938 409 Pfam WD domain, G-beta repeat 161 193 IPR001680 GO:0005515
Vivi5g02938 409 ProSitePatterns Trp-Asp (WD) repeats signature. 316 330 IPR019775 -
Vivi5g02938 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 160 202 IPR001680 GO:0005515
Vivi5g02938 409 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 160 194 - -
Vivi5g02938 409 ProSitePatterns Trp-Asp (WD) repeats signature. 180 194 IPR019775 -
Vivi5g02938 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 209 251 IPR001680 GO:0005515
Vivi5g02938 409 PRINTS G protein beta WD-40 repeat signature 316 330 IPR020472 -
Vivi5g02938 409 PRINTS G protein beta WD-40 repeat signature 180 194 IPR020472 -
Vivi5g02938 409 PRINTS G protein beta WD-40 repeat signature 272 286 IPR020472 -
Vivi5g02938 409 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 17 87 IPR022052 -
Vivi5g02938 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 252 287 IPR001680 GO:0005515
Vivi5g02938 409 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 296 331 - -
Vivi5g02938 409 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 209 247 - -
Vivi5g02938 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 296 331 IPR001680 GO:0005515
Vivi5g02938 409 Gene3D - 1 405 IPR015943 GO:0005515
Vivi5g02938 409 SMART WD40_4 346 386 IPR001680 GO:0005515
Vivi5g02938 409 SMART WD40_4 245 285 IPR001680 GO:0005515
Vivi5g02938 409 SMART WD40_4 153 193 IPR001680 GO:0005515
Vivi5g02938 409 SMART WD40_4 289 329 IPR001680 GO:0005515
Vivi5g02938 409 SMART WD40_4 202 242 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02938 Vivi-Chr5 117405953 117408297 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02938 180 387 Miscellaneous Gene Families AT5G08390 25.962 8.27e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02938 K10752 - gmx:100791834 667.537