Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02929 ATGGAAGTTAACTTCTGCGTCAACCACCACCACCACCGCACCTTCCGATTAACTTCTCCCCTCACTATTTCCTCTCATCGCACGCAATTCCTCGGTTGCAATCGCAGTCTCAGACCACCTCCACCTCCAGGTTCAGCTTCAGCTTCATCAATTCTCTCTCCAAACAAACGGAGAAATAGGTTAGGGCTTCTTCGCCTCCATTCCCCACGCTTCGTATTCAAGGCTTCTTTTCAGTCTAATCCGCTTATTGTCGTTGTCGTCGTTGTTACTATATCTGCTGTTTCTTTGATTCACTTCACTCTCAACAAGAGAAAGAAGAATCTCAGCCAGGGACGTGCAAATTTTGCATTATCACCTCAAGGAAGTAATGTTGGGAACCAGGTTATTGATAGTCAGATTCTCAGTTTTCCAGAATTTCAAAGGGATAACTCACTGAATGACGCTGGGAAGTTAAATGATCACAAAGGAAAGGACATACATGTTTTTGAGGACCAAGAAGTCCACCGCCATTTTTTGGAATCTTCCATGGTGCAGGAAACAGCTTTGAAGACTCAAACATTAGAATCATCTTCGTCTGTTCTTGACTCTAGTGTCAATGGTAATGGTTCCCATGTATTAGAGGAGCCTTTTTTATCTGTGGCTTTCCAATCGAGTCCATTGGAGCCTATAGCTTTTGCTGAAGAAATGACTCTACAAGTGGAAGAAAATCAAGATGTAGTTGACTCTAATCTCGAGTTGCCTTTGAGTATGGTCAAACCAGAGCCTAGTGCTTCTTCTGTTGGTTTAGATGACACGCACGATACAGTCAATGGCCACATTGATGAAAAAATTGAGCTTCATGCCATCAAAAGTGATGTCCCTTTTGGTGAATCTGTTAGGGAAGGGCTGTACATGTTTTATGAGGACAATAATTCTGCACCCGGATCCATTACACCCCTTAGTAACAAGTCATTTTCTCCCAGTGCTTCTTTTGTGAATAAAACAGGAGGGCCAGCAGCTATAAGAAATATCAGCTTGAATGGATTAAGATTATCGGCCGATGTTTCTCTACAAAATGCAGAGTACATTGACGAAGCAGTTAAAACTTCGGGTCACAAAGAAGGCTACCCTCCGCAGCATACAAGTAAAAATTTGAGGAAAGCCAACAGATATACGAGAGACAGGGAAAGGAACTATATGGATCATAATAGTAACGATGTTTTTCCCCAGAGTTCCCACATCATGGTGCATGTGGATCAGAAAAATGATCAAATCAGGGTCCACGATGGTCAGAATATTGATCCTTCAGAGCTTCTAAGCAAATATAATACCTTACTAACAGCTGGGAGGTTACGTGAATGTGTAGAATTGCTTAAAGATATGGAAATGAAGGGTTTATTAGATATGACTAAGGTTTATCATGCCAAGTTTTTCAAAATCTGCAAGAAACAAAAAGCTGTTAAAGAAGCTTTTGATTATGTTAGGCTTATTCCAAATCCAACGCTGAGTACATTTAATATGCTTATGTCAGTGTGTGGAAGCTCCCAAGATTCCGAAGGGGCTTTCCAAATTATGCAACTTCTTAAGGATGCTCAACTAGATCCTGATTGCAAACTTTATACCAATCTGATATCAACTTGTGCCAAAAGTGGGAAGGTTGATCTAATGTTTGAGGTGTTTCACAAGATGGTTAATTCTGGAGTGGAACCTAATGTTCATACCTATGGAGCACTTATTGATGGTTGTGCTAGAGCAGGTCAAGTAGGTAAAGCATTTGGTGCTTATGGGATAATGAGGTCAAAGAATGTGAAGCCAGATCGTGTTGTTTTCAATGCACTTATAGCTGCATGTGCACAGTCCGGAGCAGTGTCTCGTGCCTTTGATGTGGTATCAGAAATGGAAGCTGAAATACAGCCTATTGAGCCAGACCATGTAACTATTGGTACATTGATGAAGGCATGTGCAAAGGCTGGTCAGGTTGAACGTGCACATGAAGTTTATAAGATGATACAACAATATAATATAAAGGGATCTTCAGAAGTTTACACAATTGCAGTTAATTCTTGTAGTCAAACTGGAGATTGGGAATTTGCACGTAGTGTATACAATGATATGACCCAGAAAGGGGTGCTCCCTGATGAGATGTTTATGAGTGCACTAATAGATGTTGCTGGGCATGCCAAAAAGCTGGAGGCTGCCTTTGATATCCTACAACAAGCCCGGAAAGAAGGATTACCGATTGGAATAATGACATATAGCTCGTTGATGGGTGCCTGTTGCAAGACAAAAAATTGGCAGAAAGGGTTGGAGCTTTATGATTATCTTAAATCTCTTAAATTGGTGCAAACAGTTTCAACTGTTAATGCATTGCTCACTGCACTTTGTGACGGGGATCAATTTCAGAAGGCTTTGGAGGTTTTATCTGAAATGAACGGATTAGGATTGCGCCCTAACAGTATCACATTCTCAATACTTATTGTGGCCAGTGAGAAGAGGGATGACATGGAAGCAGCTCTAATGCTCCTTTCGCAAGTGAAAAAGGATGGTGCAGCCCCTACTCTCATCATGTGTCGATGCATAATTGGAATGTGCCTGCGGAGATTTGAGAAGGCTTGCCTTGTTGGTGAACCTGTTTTATCTTTTGATTCAGGACGGCCACAAGTAAATAATGAATGGACATCACTGGCTTTAATGGTATATCGTGAAACAATCGGAGCTGGTGAAAAACCTACAAGTGAAGTATTGTCACAAATTCTGGGATGCTTGAAATTCCCTTATGATACATATATGAGAAGTAGACTTGTTGAGAACCTGGGAGTAAGCGCTGAATCCTCACAAAATTCAAACCTCTGCTCATTGATAGATGGATTTGGTGAATATGATCCTCGTGTTTTTTCAATACTTGAGGAAGTTGCTTCATATGGAGTTGTTCCATCTGTATCATTTAATGTGAATCCTATTGTGATCGATGTTAAAGAATTGCATCCTTATACTGCTGAGGTATACCTCTTAACTATTTTGAAAGGTCTCAAGCATCGATTAGCAGCAGGTGCAAGACTACCCAATATAATCATTTTATTGCCTGTAGAAGAAACAACAGTTTTGTCTCCCTATGGGGAAAGGATTATTATACTTGCAGAAAGAGGTGGCCAAGCAGTTGCAGCGCTGTTCAGGAGGCTTCGTATTCCTTACCAGGGTAGTGAATCGAATGGGAAGCTTAGAATAAATAGTGTGGGCCTGACAAAATGGTATCAGCCGAAGCTTGCATCTCCCACATTTGGTTTACAAGGTGACTGGAGCTCATCCCAATCACGACTCGGCAAAAACATTAGCAATCAGCAGCGAAACATTCGAACTGGCAATCTATCTTTAGACTAA 3357 0.4114 MEVNFCVNHHHHRTFRLTSPLTISSHRTQFLGCNRSLRPPPPPGSASASSILSPNKRRNRLGLLRLHSPRFVFKASFQSNPLIVVVVVVTISAVSLIHFTLNKRKKNLSQGRANFALSPQGSNVGNQVIDSQILSFPEFQRDNSLNDAGKLNDHKGKDIHVFEDQEVHRHFLESSMVQETALKTQTLESSSSVLDSSVNGNGSHVLEEPFLSVAFQSSPLEPIAFAEEMTLQVEENQDVVDSNLELPLSMVKPEPSASSVGLDDTHDTVNGHIDEKIELHAIKSDVPFGESVREGLYMFYEDNNSAPGSITPLSNKSFSPSASFVNKTGGPAAIRNISLNGLRLSADVSLQNAEYIDEAVKTSGHKEGYPPQHTSKNLRKANRYTRDRERNYMDHNSNDVFPQSSHIMVHVDQKNDQIRVHDGQNIDPSELLSKYNTLLTAGRLRECVELLKDMEMKGLLDMTKVYHAKFFKICKKQKAVKEAFDYVRLIPNPTLSTFNMLMSVCGSSQDSEGAFQIMQLLKDAQLDPDCKLYTNLISTCAKSGKVDLMFEVFHKMVNSGVEPNVHTYGALIDGCARAGQVGKAFGAYGIMRSKNVKPDRVVFNALIAACAQSGAVSRAFDVVSEMEAEIQPIEPDHVTIGTLMKACAKAGQVERAHEVYKMIQQYNIKGSSEVYTIAVNSCSQTGDWEFARSVYNDMTQKGVLPDEMFMSALIDVAGHAKKLEAAFDILQQARKEGLPIGIMTYSSLMGACCKTKNWQKGLELYDYLKSLKLVQTVSTVNALLTALCDGDQFQKALEVLSEMNGLGLRPNSITFSILIVASEKRDDMEAALMLLSQVKKDGAAPTLIMCRCIIGMCLRRFEKACLVGEPVLSFDSGRPQVNNEWTSLALMVYRETIGAGEKPTSEVLSQILGCLKFPYDTYMRSRLVENLGVSAESSQNSNLCSLIDGFGEYDPRVFSILEEVASYGVVPSVSFNVNPIVIDVKELHPYTAEVYLLTILKGLKHRLAAGARLPNIIILLPVEETTVLSPYGERIIILAERGGQAVAALFRRLRIPYQGSESNGKLRINSVGLTKWYQPKLASPTFGLQGDWSSSQSRLGKNISNQQRNIRTGNLSLD 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02929 1118 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 636 670 IPR002885 -
Vivi5g02929 1118 Gene3D Tetratricopeptide repeat domain 631 719 IPR011990 GO:0005515
Vivi5g02929 1118 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 529 563 IPR002885 -
Vivi5g02929 1118 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic 443 574 - -
Vivi5g02929 1118 Pfam Pentacotripeptide-repeat region of PRORP 644 786 IPR033443 -
Vivi5g02929 1118 Pfam Pentacotripeptide-repeat region of PRORP 496 637 IPR033443 -
Vivi5g02929 1118 Pfam PPR repeat 441 459 IPR002885 -
Vivi5g02929 1118 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 599 629 IPR002885 -
Vivi5g02929 1118 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 741 775 IPR002885 -
Vivi5g02929 1118 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 776 810 IPR002885 -
Vivi5g02929 1118 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X1 629 720 - -
Vivi5g02929 1118 FunFam Pentatricopeptide repeat-containing protein MRL1 chloroplastic 721 868 - -
Vivi5g02929 1118 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 21 1117 - -
Vivi5g02929 1118 Gene3D Tetratricopeptide repeat domain 471 630 IPR011990 GO:0005515
Vivi5g02929 1118 Gene3D Tetratricopeptide repeat domain 720 868 IPR011990 GO:0005515
Vivi5g02929 1118 Pfam Pentatricopeptide repeat domain 799 857 IPR002885 -
Vivi5g02929 1118 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 564 598 IPR002885 -
Vivi5g02929 1118 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 671 705 IPR002885 -
Vivi5g02929 1118 NCBIfam pentatricopeptide repeat 744 774 IPR002885 -
Vivi5g02929 1118 NCBIfam pentatricopeptide repeat 566 599 IPR002885 -
Vivi5g02929 1118 NCBIfam pentatricopeptide repeat 532 565 IPR002885 -
Vivi5g02929 1118 NCBIfam pentatricopeptide repeat 779 811 IPR002885 -
Vivi5g02929 1118 NCBIfam pentatricopeptide repeat 638 669 IPR002885 -
Vivi5g02929 1118 NCBIfam pentatricopeptide repeat 674 707 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02929 442 860 Glycosyltransferase AT1G05670 25.234 3.57e-30 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02929 - - gmx:100814164 1552.34