Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02799 ATGGCTGTCAATGACGCCGATCAATCTCACAAAGCTCACAGGACCCGTCAAGCCGGTCCCAAGAAGAAGAGTAAATCTAAGAAGAACCACGATGCCGATGACGGTCAGATTATGCGCAACCCCAAGGCTTTCGGTTTCTCCTCATCCAAAAAAGTCCAGCGATTACAATCACGCGCCGTCGAGAAAGAACAGCGCCGCCTTCATGTTCCCATCATTGATCGCTCTTACGGCGAAGCTCCTCCATTCGTCATCGTCGTGCAGGGTCCTCCCGGGGTTGGAAAGTCACTTTTGATTAAGTCTCTGATTAAGCATTACACAAAGCATAACTTGCCTGAAGTTCGTGGTCCAATTACAATTGTATCAGGAAAGCAAAGGAGGTTGCAGTTTGTGGAGTGTCCAAATGATATCAATGGCATGATAGATGCAGCCAAGTTTGCTGATCTAGCACTTCTACTTATTGATGGAAGTTATGGTTTTGAAATGGAAACATTTGAATTTCTTAATATTATGCAAGTTCATGGGTTCCCAAAGGTCATGGGGGTTCTTACACATCTTGATGGATTCAAGGATGTTAAAAAGTTGAGAAAAACTAAACAACGACTCAAACACCGGTTTTGGACTGAGATATATGATGGAGCTAAATTGTTTTATTTATCAGGCCTTATTCACGGAAAGTATGTCAAGCGTGAAGTTCACAATCTGGCTCGATTCATATCAGTCATGAAGTTTCATCCTTTATCTTGGCGAACTTCCCATCCCTATGTTTTGGTGGATCGTTTTGAAGATATCACTCCTCCTGAACAAGTGCATGCAAATAATAAATGTGACAGAAAAGTCACTCTTTATGGCTATCTTAGAGGTTGTAATATGAAAAAGGGCAATAAGGTGCACATAGCTGGAGTGGGCGATTATGGTTTAGCTCATGTAACTGGTTTACCTGATCCATGCCCTCTACCTTCTGCTGCCAAAAAGAAAGGACTGCGTGATAAAGAGAAGTTATTTTATGCTCCCATGTCTGGCGTTGGGGATCTTTTGTACGACAAAGATGCTGTGTACATAAATATTAATGACCACTTTGTTCAATTTTCAAAAGCTGATGATGAAAACACTGCTTCGACAAGCAAAGGAAATGAAAGAGATGTAGGAGAGGTTTTGGTGAGATCACTTCAGAATACCAAATACTCAATCAATGAAAAGCTAGAGAGTAGCTCTATCAATCTTTTTAGCCAAAATCCAAGAGTGTCCCCAGAAGCTCTATGTGATGTACAGGGTACAGATCATGCTGTAGAGGAGGATAGTGATGAAGATAATAATGGAGTGGATTCAGATGGTTCAGAATCATCTGATCAGGATGAAGCTGATGAGGCTAATGGTTCTCTTGATGATGGCAATGCAACAGATGGTAAAGCTACAAACAGAGAGCACTTAAATGAACGGATGGAGTTTCACAATGGAAGACAAAGGAGAAAAGTAATCTTTGGAAATGATGTTGGTCAAAGTGATCTAGTGGATTCAGAAGAAGATGATGAAGAAGAGGAAGAGGATGGTGCTGCCGACGATAATGAGGAATCTTCCGATTCAGAATCTTCCGATTCAGAATCTTCTGAAGGGAAAGGAGATGACAGTGACGATGACACACATGATGGCATGGGAAATGTGTCAAAGTGGAAGGAATCATTGTCAGAAAGAACTCACGCCTTAAAAGCTGCTAGTTTGATGCAACTCGTGTATGGGGAATCTACTAATGATTCGACTTCTATGAATAAAGAGAATGATAGTAGCGATGATGAAGATGGCGACTTTTTTAAGCCTATAGAAGAAGTGAAAAAGCATAATATGAGAGATGGACCAGATGATAGTATGGTCGATGCTGAGGATTGTTCCAAGTGTGCCAAACTTATAAGCCAGAAATGGGATGAGAAAGATAAAGGGGAGATTCAGAACCGCCGTTTTGTGTCTGGAAATTTGGCAAAAGCTGCATACAAAAATGAACTGCAAAAAGCTAATACTGAGGAAGATGATGAAAATGTCTATGGTGACTTTGAAGATTTAGAAGCAGGAGAAAACAATGAGATTTATCAGACAGATGCAGTAGCAACAACACATAGGGGAGTAGATTTAGAAGCTGAGGAGCGAAGGATTAAGAAACTTGCTCGTCGTGCAAAATTTGATGCTGAATATAATGGTGACCCTGAGACACCAGAGGAAGATGCTGTCGAAGAAAATGAAGCCCAGTTCCATCGTGATCAACCCACTGAAAGTAACTATTTTGATAAGTTAAAGGAGGAAATTGAGCATCGAAAGCAAATGAATATTGCGGAACTTGAGGATCTTGAGGAGGATACCAGAATAGATGTAGAAGGCTTCCGCACAGGGACATACCTAAGATTGGAGGTTAATAATGTTCCGTATGAAATGGTTGAACACTTTGATCCCTACCATCCAATATTGGTTGGAGGGGTTGGTTTAGGAGAGGAAAGTGTTGGATACATGCAGGCCAGGTTAAAGCGGCATAGGTGGCACAATAAAGTGCTGAAAACTAGAGACCCAATTATTGTTTCTGTTGGATGGAGGCGTTACCAGACAACACCAGTTTATGCTATTGAGGATCTCAATGGAAGACATCGAATGCTAAAATACACTCCAGAACACATGCATTGCCTTGCTATGTTTTGGGGCCCTCTTGCACCTCCCAACACTGGAATAATTGCTGTTCAGACTTTATCAAACAAGCAGGCATCTTTTAGGATTACCGCAACTGCAGTTGTCGTTGAGTTTAATCATGCTGCCAGGATAGTGAAGAAAATCAAAATGGTTGGCTATCCATGCAAGATATTCAAGAAAACAGCTCTTATCAAGGATATGTTCACTTCAGATCTTGAAGTAGCTCGGTTTGAAGGCGCGGCTATTCGAACAGTCAGTGGGATTAGGGGGCAGGTCAAGAAGGTTGCAAAAGTAGAGATAGGTAACAAGCCAAAAGGGAAGGGCGGGCAGATCAAAGAAGGAATTGCTAGGTGCACTTTTGAAGACAAAATTCTGATGAGTGACATTGTTTTCCTGCGAGCATGGACTCAAGTTGAAGTTCCTCAGTTTTATAATCCATTGACAACAGCGTTGCAGCCTCGTGACCAGACATGGAAAGGAATGAGAACTGTTGCAGAATTGAGAAGAGAATTCAATCTCCCTATTCCTGTAAACAAGGATTCTCTTTACCAGAAAATTGAAAGGAAACCTAGAAAGTTCAATCCATTGGTGATTCCCAAGTCTCTACAGGCAAATCTTCCCTTTGAATCAAAACCTAAGAACACACCCAAGCACAAAAGGCCGTTGCTTGATGAGAGAAGGCAAAAGGGTGTTATCATTGATCCTCGCGAGAAAAAGATTCATGCTCTTGTTCAACACCTTCAGTTAATGAAAGGTGAAAAGATGAAAAAGCGGAAGTTTAAGGAAGGGGAGAAGAGAAAAGCTAATGAAGCATTGAAAGCAAAAGAGGAGGAATTGTCGAAAAAACGGCGGAGAGAGGAAAGGCGAGAGAAATACCGAAAAGAAGACAAGCTCAACAAGAAAATTCGGAGAGCATAG 3582 0.4149 MAVNDADQSHKAHRTRQAGPKKKSKSKKNHDADDGQIMRNPKAFGFSSSKKVQRLQSRAVEKEQRRLHVPIIDRSYGEAPPFVIVVQGPPGVGKSLLIKSLIKHYTKHNLPEVRGPITIVSGKQRRLQFVECPNDINGMIDAAKFADLALLLIDGSYGFEMETFEFLNIMQVHGFPKVMGVLTHLDGFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYVKREVHNLARFISVMKFHPLSWRTSHPYVLVDRFEDITPPEQVHANNKCDRKVTLYGYLRGCNMKKGNKVHIAGVGDYGLAHVTGLPDPCPLPSAAKKKGLRDKEKLFYAPMSGVGDLLYDKDAVYININDHFVQFSKADDENTASTSKGNERDVGEVLVRSLQNTKYSINEKLESSSINLFSQNPRVSPEALCDVQGTDHAVEEDSDEDNNGVDSDGSESSDQDEADEANGSLDDGNATDGKATNREHLNERMEFHNGRQRRKVIFGNDVGQSDLVDSEEDDEEEEEDGAADDNEESSDSESSDSESSEGKGDDSDDDTHDGMGNVSKWKESLSERTHALKAASLMQLVYGESTNDSTSMNKENDSSDDEDGDFFKPIEEVKKHNMRDGPDDSMVDAEDCSKCAKLISQKWDEKDKGEIQNRRFVSGNLAKAAYKNELQKANTEEDDENVYGDFEDLEAGENNEIYQTDAVATTHRGVDLEAEERRIKKLARRAKFDAEYNGDPETPEEDAVEENEAQFHRDQPTESNYFDKLKEEIEHRKQMNIAELEDLEEDTRIDVEGFRTGTYLRLEVNNVPYEMVEHFDPYHPILVGGVGLGEESVGYMQARLKRHRWHNKVLKTRDPIIVSVGWRRYQTTPVYAIEDLNGRHRMLKYTPEHMHCLAMFWGPLAPPNTGIIAVQTLSNKQASFRITATAVVVEFNHAARIVKKIKMVGYPCKIFKKTALIKDMFTSDLEVARFEGAAIRTVSGIRGQVKKVAKVEIGNKPKGKGGQIKEGIARCTFEDKILMSDIVFLRAWTQVEVPQFYNPLTTALQPRDQTWKGMRTVAELRREFNLPIPVNKDSLYQKIERKPRKFNPLVIPKSLQANLPFESKPKNTPKHKRPLLDERRQKGVIIDPREKKIHALVQHLQLMKGEKMKKRKFKEGEKRKANEALKAKEEELSKKRRREERREKYRKEDKLNKKIRRA 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02799 1193 SMART DUF663_2 704 1026 IPR007034 -
Vivi5g02799 1193 MobiDBLite consensus disorder prediction 589 623 - -
Vivi5g02799 1193 PANTHER RIBOSOME BIOGENESIS PROTEIN 6 1177 IPR039761 GO:0042254
Vivi5g02799 1193 MobiDBLite consensus disorder prediction 1 49 - -
Vivi5g02799 1193 Coils Coil 761 781 - -
Vivi5g02799 1193 MobiDBLite consensus disorder prediction 501 530 - -
Vivi5g02799 1193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 218 IPR027417 -
Vivi5g02799 1193 MobiDBLite consensus disorder prediction 578 623 - -
Vivi5g02799 1193 MobiDBLite consensus disorder prediction 1140 1193 - -
Vivi5g02799 1193 MobiDBLite consensus disorder prediction 467 490 - -
Vivi5g02799 1193 Coils Coil 1146 1183 - -
Vivi5g02799 1193 MobiDBLite consensus disorder prediction 740 755 - -
Vivi5g02799 1193 CDD BMS1 43 272 IPR037875 GO:0005525
Vivi5g02799 1193 MobiDBLite consensus disorder prediction 427 560 - -
Vivi5g02799 1193 MobiDBLite consensus disorder prediction 531 560 - -
Vivi5g02799 1193 Pfam AARP2CN (NUC121) domain 230 315 IPR012948 GO:0005634|GO:0042254
Vivi5g02799 1193 MobiDBLite consensus disorder prediction 1092 1112 - -
Vivi5g02799 1193 SMART aarp2cn2 230 316 IPR012948 GO:0005634|GO:0042254
Vivi5g02799 1193 Gene3D - 82 244 IPR027417 -
Vivi5g02799 1193 MobiDBLite consensus disorder prediction 726 755 - -
Vivi5g02799 1193 FunFam BMS1 ribosome biogenesis factor 82 244 - -
Vivi5g02799 1193 ProSiteProfiles Bms1-type guanine nucleotide-binding (G) domain profile. 79 244 IPR030387 -
Vivi5g02799 1193 MobiDBLite consensus disorder prediction 1143 1185 - -
Vivi5g02799 1193 Pfam 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal 707 1027 IPR007034 -
Vivi5g02799 1193 MobiDBLite consensus disorder prediction 428 458 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02799 K14569 - gmx:100792176 1711.04