Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02788 ATGGGAATCTCAACTCATCTTTTCAACCTCTTGCTTTTCATTCTACTAACTTCTCATTCATCCTTTGCCGAGGTCTTTTTCGAAGAGAAATTCCAAGATGGGTGGAAAAGTCGTTGGGTGTTGTCTGATTGGAAAAGGAGTGAAGGAAAAGCAGGTACCTTTAAGTATACTGCTGGAAAATGGCCTGGAGATCCTGATGACAAAGGTATTCAGACCTATAATGATGCCAAGCATTTTTCCATATCGGCAAAGATACCAGAGTTGACCAATAAGAACAGAACCCTGGTGCTTCAGTATTCTATTAAATTTGAGCAGGATATTGAATGTGGTGGTGGTTACATCAAACTTCTTTCTGGTTATGTTAATCAGAAGAAGTTTGGCGGTGATACTCCTTATAGTTTGATGTTTGGACCGGATCTATGTGGCACACAGACAAAGAAACTCCATGTTATATTGTCATACCAGGGGCAGAATTATCCCATTAGAAAGGATTTGGAGTGTGAAACAGACAAATTAACTCATTTCTATACATTCATTCTAAGGCCTGATGCCTCTTATAGTGTCCTTGTTGATAATCGAGAAAGAGATTCTGGAAGCATGTACACGGATTGGGACATCCTTCCTCCAAAAAAAATCAAAGATGTCAAGGCAAAAAAGCCAGCAGACTGGGATGATAGAGAGTACATTGAGGACCCTAATGATGTCAAACCAGAGGGATATAATTCAATTCCAGCTGAAATCCCCGATCCAAAAGCGAAGAAGCCTGTTGACTGGGATGATGAAGATGATGGACTTTGGAAAGCCCCAAAAATTCCTAACCCAGCATACAGAGGACCGTGGAAACGAAAGAAAATCAAGAACCCCAACTACAAAGGAAAGTGGAAGACTCCATGGATTGATAACCCAGAATTTGAGGATGATCCTGATCTTTATGTGCTGAAACCAATCAAGTATGTGGGCATTGAAGTGTGGCAGGTGAAGGCCGGTTCAATTTATGACAACATCTTAATTTGTGATGACCCACAGTATGCAAAGCAAGCTGTGGAAGAATATATGATTAATAATAGAGAGGCCGAAAAAGAAGCTTTTGAAGAAGCAGAGAAAGAAAGAAGGGCTCGAGAAGAAGAGGAGGCACAAAGGGCAAGAGAAGAGGGCGAAAAAAGGAGGAGAGAGAGGGGCAGTAGATACGGAGATAAGAGGCGTCGTAGAAGGTCGGATCCCCACGAATACATGGACGATTACGAACATGATGAACTTTGA 1260 0.4159 MGISTHLFNLLLFILLTSHSSFAEVFFEEKFQDGWKSRWVLSDWKRSEGKAGTFKYTAGKWPGDPDDKGIQTYNDAKHFSISAKIPELTNKNRTLVLQYSIKFEQDIECGGGYIKLLSGYVNQKKFGGDTPYSLMFGPDLCGTQTKKLHVILSYQGQNYPIRKDLECETDKLTHFYTFILRPDASYSVLVDNRERDSGSMYTDWDILPPKKIKDVKAKKPADWDDREYIEDPNDVKPEGYNSIPAEIPDPKAKKPVDWDDEDDGLWKAPKIPNPAYRGPWKRKKIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSIYDNILICDDPQYAKQAVEEYMINNREAEKEAFEEAEKERRAREEEEAQRAREEGEKRRRERGSRYGDKRRRRRSDPHEYMDDYEHDEL 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02788 419 PRINTS Calreticulin signature 130 146 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vivi5g02788 419 PRINTS Calreticulin signature 318 338 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vivi5g02788 419 PRINTS Calreticulin signature 104 122 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vivi5g02788 419 PRINTS Calreticulin signature 285 304 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vivi5g02788 419 PRINTS Calreticulin signature 219 232 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vivi5g02788 419 PRINTS Calreticulin signature 247 269 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vivi5g02788 419 Coils Coil 348 391 - -
Vivi5g02788 419 MobiDBLite consensus disorder prediction 359 419 - -
Vivi5g02788 419 MobiDBLite consensus disorder prediction 227 259 - -
Vivi5g02788 419 FunFam Calreticulin 209 310 - -
Vivi5g02788 419 ProSitePatterns Calreticulin family signature 2. 134 142 IPR018124 GO:0005509
Vivi5g02788 419 Gene3D Calreticulin/calnexin, P domain 198 318 IPR009033 GO:0005509|GO:0005515
Vivi5g02788 419 Gene3D - 24 379 - -
Vivi5g02788 419 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 222 IPR013320 -
Vivi5g02788 419 Pfam Calreticulin family 27 261 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vivi5g02788 419 Pfam Calreticulin family 264 337 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vivi5g02788 419 PANTHER CALRETICULIN AND CALNEXIN 9 384 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vivi5g02788 419 ProSitePatterns Calreticulin family signature 1. 102 117 IPR018124 GO:0005509
Vivi5g02788 419 FunFam Calreticulin 1b 24 210 - -
Vivi5g02788 419 PIRSF Calreticulin 3 419 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vivi5g02788 419 SUPERFAMILY P-domain of calnexin/calreticulin 205 320 IPR009033 GO:0005509|GO:0005515
Vivi5g02788 419 MobiDBLite consensus disorder prediction 359 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02788 Vivi-Chr5 114490768 114499050 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02788 6 345 Miscellaneous Gene Families AT5G61790 35.000 1.56e-64 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02788 K08057 - gmx:100802428 694.886