Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02771 ATGGATCCGACCGAGCTAAAACGCGTATTCCAAATGTTCGACAAGAACGGGGACGGTAGAATAACAAAAAAAGAACTAACAGATTCGTTGGAGAATTTAGGAATCTTCATCCCGGACAAAGAGTTAACACAGATGATCGAGAAGATCGACGTCAACGGAGACGGTTGTGTAGATTTAGACGAGTTCGGAGAATTGTATCAATCCATCATGGACGAACGCGACGAAGAGGAAGATATGAGGGAGGCTTTCAATGTATTTGATCAAAACGGCGACGGTTTTATAACGGTTGAGGAGCTAAGAGTGGTTTTGTCATCTCTTGGTCTTAAACAAGGAAGAACCGTTGAGGAATGTAAGAAGATGATTATGAAGGTGGATGTTGATGGTGATGGTATGGTTAATTACAGAGAGTTTAAGCAAATGATGAAAGGAGGAGGATTCAGTGCTCTTGGATAA 453 0.4172 MDPTELKRVFQMFDKNGDGRITKKELTDSLENLGIFIPDKELTQMIEKIDVNGDGCVDLDEFGELYQSIMDERDEEEDMREAFNVFDQNGDGFITVEELRVVLSSLGLKQGRTVEECKKMIMKVDVDGDGMVNYREFKQMMKGGGFSALG 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02771 150 SUPERFAMILY EF-hand 5 144 IPR011992 -
Vivi5g02771 150 Gene3D - 2 68 - -
Vivi5g02771 150 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Vivi5g02771 150 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
Vivi5g02771 150 FunFam Calmodulin-like protein 5 1 74 - -
Vivi5g02771 150 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Vivi5g02771 150 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Vivi5g02771 150 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Vivi5g02771 150 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Vivi5g02771 150 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Vivi5g02771 150 Pfam EF-hand domain pair 5 67 IPR002048 GO:0005509
Vivi5g02771 150 Pfam EF-hand domain pair 76 142 IPR002048 GO:0005509
Vivi5g02771 150 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Vivi5g02771 150 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 76 142 - -
Vivi5g02771 150 CDD EFh 82 142 IPR002048 GO:0005509
Vivi5g02771 150 Gene3D - 69 144 - -
Vivi5g02771 150 PRINTS Parvalbumin signature 65 83 - -
Vivi5g02771 150 PRINTS Parvalbumin signature 87 103 - -
Vivi5g02771 150 PRINTS Parvalbumin signature 124 137 - -
Vivi5g02771 150 SMART efh_1 5 33 IPR002048 GO:0005509
Vivi5g02771 150 SMART efh_1 116 144 IPR002048 GO:0005509
Vivi5g02771 150 SMART efh_1 78 106 IPR002048 GO:0005509
Vivi5g02771 150 SMART efh_1 41 69 IPR002048 GO:0005509
Vivi5g02771 150 FunFam calmodulin-like protein 3 75 145 - -
Vivi5g02771 150 CDD EFh 5 62 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02771 Vivi-Chr5 114290276 114291055 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02771 1 148 EF-hand Containing Proteins AT2G43290 75.817 9.43e-82 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02771 K13448 - csv:101210877 280.026