Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02743 ATGCTAGTTCTTCCCTCTTCTCCTCCGTTTGTTTTGGGAAGTTGGAGAATCAACGTCGCGATCATGTCCGAGACAAGACGTTTCCGTCACAAATCTCCTCTCTCCAACACCAATAACGCACCCGCTTCCGTCAAGCCCAGCGCTTCACTGTCCCAACAACTTCACGTCTATGTCAGAAGAAACAAGAGAGCCAAAGGAATCACCACTACGTCAAAGCTTCAAGACAATCATCATCATCTTTTACCCCCAACTCAGACTCACAAAAAGTTAGGTCTTCCTGAAATTGAAGATTTTGCTTACAGAGGAGCAAATGAGTTGACTCATCGCAGAAAATCAGAAATGAGCTCAGATGTGACTCCAACTGAAAGTGAAGTTGCTTCTTCTACAACACAAAGGAGTGGATTACCTGCTCACTGGGAAGAGACGCTTGAAGGTATTCGCAAAATGAGGTGTTCTGCAGATGCACCAGTAGACACTATGGGATGTGAGAAAGCTGGTTCTACACTACCCCCTAAGGAAAGAAGATTTGCTGTCCTGGTATCTTCCCTTTTATCAAGTCAAACCAAGGATCATATTAATCACGGAGCAATCCAACGTCTTCTTCAAAATGATCTGCTTACTCCTGATGCAATCAACAATGCTGACGAAGAAACAATCAAAAAGTTGATTTACCCAGTTGGATTTTATACAAGAAAAGCCACTAATTTGAAAAAAATCGCAAATATTTGTCTCATGAAGTATGGGGGAGACATACCTAACACAATTGAGCAACTACTCGTACTTCCGGGCATAGGTCCTAAGATGGCTCATTTGGTTATGAATGTTGCATGGAACAATGTCCAAGGTATATGTGTAGATACTCATGTCCATCGCATTTGCAATCGGCTAGGCTGGGTGTCAAAATTGGGCACGAAACAGAAAACTTCGACACCTGAAGAGACTAGAGTGTCACTGCAGCTGTGGCTTCCAAGGGAAGAATGGGATCCAATAAATCCTCTATTGGTAGGATTTGGACAAACAATTTGTACACCTCTAAGACCTCGATGTGGAGAATGTGGTATCAGTCACTTGTGTCCATCGGCGTTCAAGGAGGCCTCAGGTTCAAGCCCAGTATCAAAGTCCACAAAGTCACGAAAGAGCAAGAAGCTTTAA 1152 0.434 MLVLPSSPPFVLGSWRINVAIMSETRRFRHKSPLSNTNNAPASVKPSASLSQQLHVYVRRNKRAKGITTTSKLQDNHHHLLPPTQTHKKLGLPEIEDFAYRGANELTHRRKSEMSSDVTPTESEVASSTTQRSGLPAHWEETLEGIRKMRCSADAPVDTMGCEKAGSTLPPKERRFAVLVSSLLSSQTKDHINHGAIQRLLQNDLLTPDAINNADEETIKKLIYPVGFYTRKATNLKKIANICLMKYGGDIPNTIEQLLVLPGIGPKMAHLVMNVAWNNVQGICVDTHVHRICNRLGWVSKLGTKQKTSTPEETRVSLQLWLPREEWDPINPLLVGFGQTICTPLRPRCGECGISHLCPSAFKEASGSSPVSKSTKSRKSKKL 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02743 383 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 342 358 IPR004035 -
Vivi5g02743 383 MobiDBLite consensus disorder prediction 109 135 - -
Vivi5g02743 383 Pfam Helix-hairpin-helix motif 246 274 IPR000445 GO:0003677
Vivi5g02743 383 Pfam HhH-GPD superfamily base excision DNA repair protein 180 309 IPR003265 GO:0006284
Vivi5g02743 383 CDD ENDO3c 176 338 IPR003265 GO:0006284
Vivi5g02743 383 Gene3D Hypothetical protein; domain 2 171 280 - -
Vivi5g02743 383 ProSitePatterns Endonuclease III family signature. 249 278 IPR004036 -
Vivi5g02743 383 SMART endo3end 184 340 IPR003265 GO:0006284
Vivi5g02743 383 MobiDBLite consensus disorder prediction 118 135 - -
Vivi5g02743 383 FunFam Endonuclease III homolog 274 364 - -
Vivi5g02743 383 FunFam Endonuclease III-like protein 1 171 275 - -
Vivi5g02743 383 SMART ccc3 341 361 IPR003651 GO:0051539
Vivi5g02743 383 MobiDBLite consensus disorder prediction 363 383 - -
Vivi5g02743 383 Gene3D - 281 358 IPR023170 -
Vivi5g02743 383 Hamap Endonuclease III-like protein 1 [NTHL1]. 135 364 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Vivi5g02743 383 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 58 376 - -
Vivi5g02743 383 SUPERFAMILY DNA-glycosylase 147 370 IPR011257 GO:0003824|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02743 Vivi-Chr5 113645744 113650050 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02743 K10773 - gmx:100818398 494.967