Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02672 ATGGAGGCTCTTGTATATGTTATTGTGGCCTTCATGCTGTGTGGTTGTGCTGCTGGAAGGGAATGCACAAACATTCCGACTCAATCGCATACGTTGCAATATGAATTAGGGGTATCAAAGAATGAGACATGGAAGAAAGAAGTTATGTCTCATTATCATGTGACACCGACTGATGATTCAGCTTGGGCAGATTTGTTACCGAGGAAGTTGTTGGCAGAAGACCACCAGCGTGATTGGAGTGTTATGTATAGGAAAGTTAAGAATTTGGGTGTGTTTAAGCCACCTGTTGGATTTCTCAAAGAAGTTCCTCTTGAGGATGTGAGGTTACTGGAAGGTTCTGTTCATGCTGAGGCACAGCAGACTAATTTGGAGTATCTGTTGATGTTAGATGTTGATAGTATGATTTGGAACTTCAGGAAGACGGCTGGATTACCAACTCCGGGTACACCTTATGGTGGATGGGAGGCTCCTGGTTTGGAACTCCGAGGACATTTTGTTGGGCATTACTTGAGTGCATCAGCTCTAATGTGGGCCAGCACAAAGAACGATAGTCTGAAGAAGAAAATGTCAGCTCTTGTTACCGGTCTATCCGCTTGTCAGGAGAAAATTGGAACAGGATATTTATCTGCATTTCCCGCTGACTTTTTTGATCGATTTGAAGCTAATCAACCTGTTTGGGCTCCCTATTACACAGTTCACAAGATCATGGCTGGCTTGTTGGATCAACATACTATAGCTGGAAATCCTCAAGCTCTAAAAATGTTGACATGGATGGTCGATTACTTTTACAACCGAGTGAAGAATGTAATAACAAAGTACACTGTACATAGACACTATGATTCCCTGAATGAGGAAACTGGAGGAATGAATGATGTCCTTTACAAATTATATAGCGTAACGGGGGATTCAAAGCATCTATTGTTGGCTCACCTTTTCGACAAACCATGCTTTTTAGGGTTGCTTTCAGTAGAGGCTGATGACATAGCTGATTTTCACGCTAATACACACATCCCAATTGTTGTTGGAGCTCAAATGCGGTATGAAGTCACGGGTGATCCACTTTATAAGGATATTGGGACATTCTTTATGAGCATTGTAAACTCTTCACACAGCTATGCAACGGGAGGGACATCAGTCGGCGAGTTCTGGAAAAATCCAAAGAGAATGGCAGACACCATGTCAACAGAGAATGAAGAATCCTGCACAACTTATAATATGTTGAAGGTTTCACGCCACTTGTTCAGATGGACCAAAGAAGTCTCTTATGCAGATTATTATGAGCGCGCCTTAACAAATGGTGTACTTGGTGTTCAAAGAGGAACAGATCCTGGGGTGATGATTTATATGCTTCCTCTAGCAAATGGGGTTTCCAAAGCTAAAACTTATCATGGTTGGGGAACACCATTTAATTCATTCTGGTGCTGCTATGGAACAGGAATTGAATCATTTTCAAAGCTGGGAGACTCTATATATTTTGAAGAGGAAGGGAATAGTCCTAGTCTATACATCATTCAGTATATATCAAGCTCATTTAATTGGAAATCTGGGAAAGTTTTGCTCACTCAGACAGTTATTCCAGCTGCTTCGTCGGACCCTTACCTACGAGTTTCATTTACCTTCTCTCCTAATGAGAAAATTGGGACTTCGTCAACATTGAACTTTCGTCTACCATCTTGGACTCACGCCGATGGTGCCAAGGCAATATTGAATACTGAAACTTTATCTCTGCCAGCTCCAGGGAATTTTTTGTCAATCACACGCCAGTGGAGTGCTGGTGACAAGCTGGCTCTTCAGTTTCCGCTTATCCTCAGAACAGAAGCCATAAAAGATGAAAGACCTGAATTTGCATCTCTCCAAGCAATTCTTTATGGACCATATCTTCTCGCCGGTCATACCTCCAGAAATTGGGACATTAAAGCGGGTGCTAACACATCTGTTGCGGATTGGATTACTCCAATTCCTTCCAGTTACAATGATCAACTAGTTTCTTTGTCACAAGACTTTGAAAACTCAACTTTTGTTATAACAAACACAAACCAATCACTCTCAATGCAAAACTTACCTGCAGCTGGAACCGAGTTCGCTCTTTATGCTACCTTTAGACTTATCCAAAAAGATGCTACTAGTAAATCAGTGATTTTAGAACCAATTGATCTACCTGGAATGACCGTAAGTCACCAAGGACCAGACCAACCTCTTATCATGGTAGATTCCTCCCACGACGGACCTTCTTCGAAATTTCTAGTCGTACCAGGATTGGACAGACGAAATCAGACCGTATCTTTAGAATCAGAAAGCAATAAAGATTGTTACGTGCATAGTGATATGAGCCCTGGTTCAGGACTTAAGCTCAAGTGCAAGTCTGATTCTGAAGCTAGTTTTAACCAAGCAACAAGTTTTGTTTTTGGGAAAGGATTAAAGCAGTACCATCCTATTAGCTTTGTAGCTAAAGGTATATACCAGGACTTTATTTTAGAGCCATTGTTCAACTTCCGGGATGAACATTATACAGTTTATTTCAACATTCAAGGTTAA 2535 0.413 MEALVYVIVAFMLCGCAAGRECTNIPTQSHTLQYELGVSKNETWKKEVMSHYHVTPTDDSAWADLLPRKLLAEDHQRDWSVMYRKVKNLGVFKPPVGFLKEVPLEDVRLLEGSVHAEAQQTNLEYLLMLDVDSMIWNFRKTAGLPTPGTPYGGWEAPGLELRGHFVGHYLSASALMWASTKNDSLKKKMSALVTGLSACQEKIGTGYLSAFPADFFDRFEANQPVWAPYYTVHKIMAGLLDQHTIAGNPQALKMLTWMVDYFYNRVKNVITKYTVHRHYDSLNEETGGMNDVLYKLYSVTGDSKHLLLAHLFDKPCFLGLLSVEADDIADFHANTHIPIVVGAQMRYEVTGDPLYKDIGTFFMSIVNSSHSYATGGTSVGEFWKNPKRMADTMSTENEESCTTYNMLKVSRHLFRWTKEVSYADYYERALTNGVLGVQRGTDPGVMIYMLPLANGVSKAKTYHGWGTPFNSFWCCYGTGIESFSKLGDSIYFEEEGNSPSLYIIQYISSSFNWKSGKVLLTQTVIPAASSDPYLRVSFTFSPNEKIGTSSTLNFRLPSWTHADGAKAILNTETLSLPAPGNFLSITRQWSAGDKLALQFPLILRTEAIKDERPEFASLQAILYGPYLLAGHTSRNWDIKAGANTSVADWITPIPSSYNDQLVSLSQDFENSTFVITNTNQSLSMQNLPAAGTEFALYATFRLIQKDATSKSVILEPIDLPGMTVSHQGPDQPLIMVDSSHDGPSSKFLVVPGLDRRNQTVSLESESNKDCYVHSDMSPGSGLKLKCKSDSEASFNQATSFVFGKGLKQYHPISFVAKGIYQDFILEPLFNFRDEHYTVYFNIQG 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02672 844 PANTHER PROLINE-TRNA LIGASE (DUF1680) 17 842 - -
Vivi5g02672 844 Pfam Beta-L-arabinofuranosidase, GH127 106 629 IPR012878 -
Vivi5g02672 844 SUPERFAMILY Six-hairpin glycosidases 150 473 IPR008928 GO:0005975
Vivi5g02672 844 Gene3D - 704 832 - -
Vivi5g02672 844 SUPERFAMILY AbfB domain 736 818 IPR036195 GO:0046373|GO:0046556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02672 Vivi-Chr5 112580297 112585491 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02672 K09955 - gmx:100791803 1372.07