Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02658 ATGTCAATTCGGTGTTTCACTAGAAAATGGAAAACCTGTCGTCTAGCTTCACTTTTCGGAGAGTTAACGTCAAACTTCACGAAAAGTATAAACCCTGTCAGAGACGTTTCAACTACACTGTCTTTGAGACAAATTGTTACAGTGTTTGAATACAAAAACATGTGCGGCGGTTTTAGAGAATATCACGACGGAAGACCAAGGGGTCCTCTTTGGAGGGGAAAGAAGCTCATTGGTAAAGAAGCTCTCTTTGTCATTTCCGGGTTGAAGAGGTTTAAAGATGATGAGGAGAAGCTTCCCAAGTTTATCAAAACTCATGTTTTGCGGCTCTTGAAGATGGACTTGATTGCTGTTCTCACTGAACTTGAACGTCAAGAGGAAGTCTCTCTCGCTCTCACGGTGTTTAAGGTGATGCAAAGGCAGGATTGGTACAAGCCTGATATATTCCTGTACAAAGACTTAATTATTGCGTTGGCAAGGGCTAAAAGAATGGATGACGTGTTGCAATTGTGGGAAAGCATGAAGAAGGAGGATCTGTTCCCTGATTCGCAAACTTATACTGAAGTCATAAGGGGCTTCTTGAGCAGTGGATCTCCTGCAGATGCGATGAACATATATGAGGACATGAAGAGTTCTCCGGATCCACCAGAGGAACTGCCGTTCAGAATTTTGTTGAAAGGGCTCCTGCCTCATCCTCTTTTGAGAAACAAAGTGAAACAAGATTTCGAGGAGATCTTTCCTGATTCAAGTATCTATGATCCTCCACAAGAGATATTTGGTGCACGCTGA 786 0.4275 MSIRCFTRKWKTCRLASLFGELTSNFTKSINPVRDVSTTLSLRQIVTVFEYKNMCGGFREYHDGRPRGPLWRGKKLIGKEALFVISGLKRFKDDEEKLPKFIKTHVLRLLKMDLIAVLTELERQEEVSLALTVFKVMQRQDWYKPDIFLYKDLIIALARAKRMDDVLQLWESMKKEDLFPDSQTYTEVIRGFLSSGSPADAMNIYEDMKSSPDPPEELPFRILLKGLLPHPLLRNKVKQDFEEIFPDSSIYDPPQEIFGAR 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02658 261 PANTHER PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC 47 260 IPR044795 -
Vivi5g02658 261 Pfam PPR repeat family 145 192 IPR002885 -
Vivi5g02658 261 Gene3D Tetratricopeptide repeat domain 75 261 IPR011990 GO:0005515
Vivi5g02658 261 NCBIfam pentatricopeptide repeat 184 210 IPR002885 -
Vivi5g02658 261 NCBIfam pentatricopeptide repeat 152 181 IPR002885 -
Vivi5g02658 261 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
Vivi5g02658 261 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02658 Vivi-Chr5 111990325 111993938 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02658 116 227 Miscellaneous Gene Families AT4G11690 26.786 3.09e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02658 - - psat:127105833 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g02658 5 111990325 111993938 Vivi5g02658 5 111990325 111993938 ECH