Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02604 ATGGGTCAAGGTCTTAGTTGCAGAGGGAGTCATGAACATGGACTCTTTCGTGCTGTCCAACATGGTCATCTTCAAACTGTTGTTACTTTGTTGCAGAAGCATCCTTCTCTTATTCATCGTACTACTGTTTATGACCACCATTCCCCTCTTCATATTGCTGCTGCTAATGGTCAGATCCAGGTTTTGTCTAGGCTTTTGGATGGATCTGCAAATCCAGATGTGTTGAATAGGCAAAAGCAGACCCCGCTTATGTTGGCAGCGATGCATGGAAAAATTGATTGTGTGGAAAAGCTACTTGAAGCTGGTGCTAATGTTTTAATGTTTGATGTGTGTCATGGAAGAACTTGTTTGCACTATGCTGCTTACTATGGTCATTCTTCTTGCCTTAAAGCAATACTTTCTGCTGCTCAAACTAGTCCGGTCGCTGCTTCTTGGGGGTTTTCGCGGTTTGTGAATATTAGAGACGGTAGGGGTGCTACACCGTTGCATTTAGCAGCTCGTCAAAGACGGTCTGAATGTGTGCATGCTTTGTTGTGTAGTGGAGCTCTTGTTTCTGCTTCGACTAGCAGATATGGATGTCCCGGGAGCACTCCTCTTCATCTAGCAGCTAAAGGAGGATCTTTGGATTGCATCCGCGAACTATTAGCATGGGGTGCAGATCGTCTTCAACGCGATGCATCTGGGCGTATACCGTATGTGGTTGCTCTGAAGTACAAACATGGAGCATGTGCAGCATTGCTAAATCTTTCGTCTGCTCAGCCTCTTGTCTGGCCGTCGTCATTGAAAATTATCAGCGAGCTTAATCAGGAGGCTAAAGCTCTATTAGAGCAGGCCTTGATGGACGCAAACAGAGAAAGGGAGAAAAACATATTGAAAGGAAGTCCGTACTCCCTTCCGTCTCCATCACACCCTGATCAGATTGACGATAATATCTCTGAGGTTAGTGAGACGGAACTATGTTGCATCTGCTTTGAGCAAGTGTGTACAATTGAAGTCCAAGACTGTGGCCACCAAATGTGTGCACAATGCACACTAACACTCTGTTGTCACAACAAGCCGAACACATCGACCTCTCAACCAACCCCGCCCGTCTGTCCGTTCTGTCGAAGCGCCATATCTAAACTGATGGTGATCAAGATAGAAACTCACCAAGACATCGACCTAGACGGTACACCCGATACCACTTGTTTCAAGCCAAGCAAGTCACGAAAATATCGAAACATGAACGAAGGCTGTAGCAGCAGTTTCAAGGGAATGTCCAATGTAAACTCATTCGGAAAAATGAACGGCCGTGGTTCCGGTATGATTGCTTCCGATAACGAGTGGGTTGATGATAAGCCACAATGA 1347 0.4581 MGQGLSCRGSHEHGLFRAVQHGHLQTVVTLLQKHPSLIHRTTVYDHHSPLHIAAANGQIQVLSRLLDGSANPDVLNRQKQTPLMLAAMHGKIDCVEKLLEAGANVLMFDVCHGRTCLHYAAYYGHSSCLKAILSAAQTSPVAASWGFSRFVNIRDGRGATPLHLAARQRRSECVHALLCSGALVSASTSRYGCPGSTPLHLAAKGGSLDCIRELLAWGADRLQRDASGRIPYVVALKYKHGACAALLNLSSAQPLVWPSSLKIISELNQEAKALLEQALMDANREREKNILKGSPYSLPSPSHPDQIDDNISEVSETELCCICFEQVCTIEVQDCGHQMCAQCTLTLCCHNKPNTSTSQPTPPVCPFCRSAISKLMVIKIETHQDIDLDGTPDTTCFKPSKSRKYRNMNEGCSSSFKGMSNVNSFGKMNGRGSGMIASDNEWVDDKPQ 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02604 448 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Vivi5g02604 448 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 388 IPR013083 -
Vivi5g02604 448 Gene3D - 9 148 IPR036770 -
Vivi5g02604 448 Coils Coil 268 288 - -
Vivi5g02604 448 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Vivi5g02604 448 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Vivi5g02604 448 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Vivi5g02604 448 SUPERFAMILY RING/U-box 319 375 - -
Vivi5g02604 448 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Vivi5g02604 448 Gene3D - 149 197 IPR036770 -
Vivi5g02604 448 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Vivi5g02604 448 SMART ANK_2a 112 142 IPR002110 GO:0005515
Vivi5g02604 448 SMART ANK_2a 157 186 IPR002110 GO:0005515
Vivi5g02604 448 SMART ANK_2a 78 107 IPR002110 GO:0005515
Vivi5g02604 448 SMART ANK_2a 45 74 IPR002110 GO:0005515
Vivi5g02604 448 SMART ANK_2a 194 223 IPR002110 GO:0005515
Vivi5g02604 448 SMART ANK_2a 10 40 IPR002110 GO:0005515
Vivi5g02604 448 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Vivi5g02604 448 Pfam Ankyrin repeats (3 copies) 112 184 IPR002110 GO:0005515
Vivi5g02604 448 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 15 135 - -
Vivi5g02604 448 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Vivi5g02604 448 Gene3D - 198 252 IPR036770 -
Vivi5g02604 448 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Vivi5g02604 448 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Vivi5g02604 448 Pfam Ankyrin repeats (many copies) 195 232 IPR002110 GO:0005515
Vivi5g02604 448 SUPERFAMILY Ankyrin repeat 14 247 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02604 Vivi-Chr5 109799619 109802186 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02604 36 237 Miscellaneous Gene Families AT5G02620 28.095 8.21e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02604 - - gmx:100800611 785.023