Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02580 ATGGCTTCTTCTTCATCTTCTTCCTCCTTAACCAACTCTCTCCTCATCTCCACCTTCCTCTTCCTCACCATCTTCTCGTCCTCCCACGCTCTTTTCTTCACCTTTGTTAACAACTGCCCCTACACTGTCTGGCCAGCTATCCTACCCAACGAAGGCCATCCCAACCTCGCCAGCGGCGGCTTCGAGCTCCGCACCTTCACCCACCGCTCCATCAACGTCCCCGACACCCACTGGGCCGGCCGTGCCTGGGCCAGAACCGGCTGCTCCACCACCAACAACAAATTCTCCTGTCTCACCGGAGACTGCGCAAACCGCCTCGAATGCAACGGAGCTGGCGGTTCACTACCCGCCACACTAGTCCAGTTCGACGTACATCACGGCAACAACGACTTCTCCTCTTACAGCGTCAGCCTCGTCGACGGTTTCAACACCCCTCTGACAGTCACACCGCACGAGGGTAAAGGTCAGTGTCCCGTGGTTGGTTGTAAATCAAATCTCGTTGCTACATGTCCTGATGTTTTGCAGCACCGTGTTCCTGCTGTTCATGGTCCTGTTGTGGCGTGTAAGAGTGGCTGTGAAGCTTTTCACACGGACGAGTTCTGTTGTAGGAACCATTTCAACAACCCTCAGACTTGTAAGCCTACTGTGTATACCAATTTCTTCAAACACGCGTGTCCGGAGACTTTTACCTACGCGCATGATACTCCTTCTTTGACTCATCAGTGTTCTTCTCCTCGTGAACTTAAGGTTATCTTTTGTCACTGA 765 0.5294 MASSSSSSSLTNSLLISTFLFLTIFSSSHALFFTFVNNCPYTVWPAILPNEGHPNLASGGFELRTFTHRSINVPDTHWAGRAWARTGCSTTNNKFSCLTGDCANRLECNGAGGSLPATLVQFDVHHGNNDFSSYSVSLVDGFNTPLTVTPHEGKGQCPVVGCKSNLVATCPDVLQHRVPAVHGPVVACKSGCEAFHTDEFCCRNHFNNPQTCKPTVYTNFFKHACPETFTYAHDTPSLTHQCSSPRELKVIFCH 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02580 254 SUPERFAMILY Osmotin, thaumatin-like protein 32 253 IPR037176 -
Vivi5g02580 254 FunFam THAUMATIN-LIKE PROTEIN 1 31 254 - -
Vivi5g02580 254 SMART tha2 33 254 IPR001938 -
Vivi5g02580 254 PIRSF PR5 1 254 IPR001938 -
Vivi5g02580 254 PRINTS Pathogenesis-related protein signature 244 253 IPR001938 -
Vivi5g02580 254 PRINTS Pathogenesis-related protein signature 132 148 IPR001938 -
Vivi5g02580 254 PRINTS Pathogenesis-related protein signature 32 44 IPR001938 -
Vivi5g02580 254 PRINTS Pathogenesis-related protein signature 81 92 IPR001938 -
Vivi5g02580 254 CDD TLP-PA 33 253 - -
Vivi5g02580 254 ProSiteProfiles Thaumatin family profile. 33 254 IPR001938 -
Vivi5g02580 254 Pfam Thaumatin family 37 253 IPR001938 -
Vivi5g02580 254 Gene3D Thaumatin 32 253 IPR037176 -
Vivi5g02580 254 PANTHER OS03G0233200 PROTEIN 20 253 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02580 Vivi-Chr5 108528466 108529486 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02580 14 253 Receptor kinase-like Gene Family AT5G38280 39.184 6.30e-48 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02580 - - cam:101503313 434.106