Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02563 ATGGCGCCAAAGGGAGAGAAGAAGCCTGCTGAGAAGAAACCCGCAGAGGAGAAAAAGACCACCGTTGCCGAGAAGGCTCCTGCCGAGAAGAAGCCAAAGGCCGGAAAGAAGCTGCCCAAGGATGGCGGTGCCGCCGCTGGAGACAAGAAGAAGAAGAGAAACAAGAAGAGCGTGGAGACATACAAGATCTACATCTTCAAAGTTCTGAAGCAAGTTCACCCAGACATTGGTATCTCAAGCAAGGCCATGGGTATCATGAACAGTTTCATCAACGACATCTTCGAGAAGCTTGCTGCTGAATCTTCAAGACTTGCAAGGTACAACAAGAAGCCAACTATCACTTCAAGGGAAATTCAAACCGCGGTCAGACTTGTTCTTCCCGGTGAATTGGCCAAGCATGCCGTATCTGAGGGTACCAAAGCTGTTACCAAGTTTACCAGTTCTTAA 447 0.4877 MAPKGEKKPAEKKPAEEKKTTVAEKAPAEKKPKAGKKLPKDGGAAAGDKKKKRNKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAAESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02563 148 Gene3D Histone, subunit A 23 148 IPR009072 GO:0046982
Vivi5g02563 148 SUPERFAMILY Histone-fold 32 148 IPR009072 GO:0046982
Vivi5g02563 148 PRINTS Histone H2B signature 80 100 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vivi5g02563 148 PRINTS Histone H2B signature 132 145 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vivi5g02563 148 PRINTS Histone H2B signature 61 79 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vivi5g02563 148 PRINTS Histone H2B signature 102 119 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vivi5g02563 148 PRINTS Histone H2B signature 119 132 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vivi5g02563 148 FunFam Histone H2B 15 148 - -
Vivi5g02563 148 PANTHER HISTONE H2B 9 147 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vivi5g02563 148 SMART h2b3 51 147 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vivi5g02563 148 Pfam Core histone H2A/H2B/H3/H4 1 124 IPR007125 GO:0003677
Vivi5g02563 148 ProSitePatterns Histone H2B signature. 116 138 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vivi5g02563 148 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02563 Vivi-Chr5 108265753 108266472 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02563 K11252 - gmx:111828532 190.274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g02563 5 108265753 108266472 Vivi5g02563 5 108265753 108266472 ECH