Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02542 ATGGATATTGATCTCACTCCCCAATTGTCGAAGAAAGTGTACGGTGACAATGGTGGATCGTATTACAGTTGGTCACCGTCTGAACTTCCTATGCTCCGTGAAGGTAACATTGGTGCTGCCAAGTTAGCTCTTGAGAAGAACGGTTTTGCCACTCCTCGCTACTCTGATTCTTCCAAAGTTGCGTATGTTCTTCAAGGAAGTGGAGTTGCTGGAATTGTGCAACCTGAATCAGAAGAGAAGGTTCTTGCAATTAAGACTGGTGATGCTTTGGCACTCCCTTTTGGTGTTGTGACATGGTGGTTCAACAAAGAGGACACTGAGTTGGTTATTCTGTTTCTTGGGGATACTTCAAAAGCACACAAAGCTGGTGAGTTTACTGATTTTTTCCTAACTGGTCCTAACGGAATCTTTACTGGATTTTCGACCGAGTTTGTGGGAAGAGCTTGGGACTTGGACGAGACCAATGTGAAGACACTTGTTGGGAAACAAACTGGTAAGGGGATTGTGAAGCTTGATGGAAGCATCAGCCTTCCTGAGCCTAAAGATGGAGACAGGAAAGGCATGGTCTTGAATTGTTTAGAGGCCCCATTGGATGTCGATATTAAGAATGGTGGAAGGGTTGTTGTTTTGAACACCAAGAACCTTCCTTTGGTTGGTGAGGTTGGTTTGGGAGCTGACCTTGTGAGGCTTGACGGAAATGCCATGTGCTCTCCTGGATTCTCTTGCGATTCTGCTTTCCAGGTTACTTATGTTGTCAGGGGAAGCGGACGCGTTCAAGTTGTTGGTGTCGATGGCAAGAGGGTTTTGGAGACTACTTTGAAGGCTGGAAATTTGTTCATTGTCCCAAGGTTTTTCGTCGTCTCCAAGATTTGTGACCCCGAGGGAATGGAATGGTTTTCTATCATCACTACTCCTAATCCTATCTTTACACACATGGCTGGAAGTTCTTCGGTATGGAAGGCATTATCATCTACAGTTCTGCAGGCTGCTTTCAATGTAGATGCTGAAACTGAGAAACTCTTCCGTTCTAAGAGGACTGGCGATGCCATTTTCTTCCCTCCCCCAAATTAA 1071 0.4528 MDIDLTPQLSKKVYGDNGGSYYSWSPSELPMLREGNIGAAKLALEKNGFATPRYSDSSKVAYVLQGSGVAGIVQPESEEKVLAIKTGDALALPFGVVTWWFNKEDTELVILFLGDTSKAHKAGEFTDFFLTGPNGIFTGFSTEFVGRAWDLDETNVKTLVGKQTGKGIVKLDGSISLPEPKDGDRKGMVLNCLEAPLDVDIKNGGRVVVLNTKNLPLVGEVGLGADLVRLDGNAMCSPGFSCDSAFQVTYVVRGSGRVQVVGVDGKRVLETTLKAGNLFIVPRFFVVSKICDPEGMEWFSIITTPNPIFTHMAGSSSVWKALSSTVLQAAFNVDAETEKLFRSKRTGDAIFFPPPN 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02542 356 PRINTS 11-S seed storage protein family signature 258 274 IPR006044 GO:0045735
Vivi5g02542 356 PRINTS 11-S seed storage protein family signature 294 312 IPR006044 GO:0045735
Vivi5g02542 356 PRINTS 11-S seed storage protein family signature 276 291 IPR006044 GO:0045735
Vivi5g02542 356 PRINTS 11-S seed storage protein family signature 211 231 IPR006044 GO:0045735
Vivi5g02542 356 PRINTS 11-S seed storage protein family signature 316 333 IPR006044 GO:0045735
Vivi5g02542 356 CDD cupin_11S_legumin_N 4 173 - -
Vivi5g02542 356 Gene3D Jelly Rolls 195 356 IPR014710 -
Vivi5g02542 356 Gene3D Jelly Rolls 8 175 IPR014710 -
Vivi5g02542 356 PANTHER OS03G0336100 PROTEIN-RELATED 8 354 - -
Vivi5g02542 356 CDD cupin_11S_legumin_C 198 353 - -
Vivi5g02542 356 FunFam Glycinin G1 193 356 - -
Vivi5g02542 356 SMART Cupin_1_3 3 157 IPR006045 -
Vivi5g02542 356 SMART Cupin_1_3 195 339 IPR006045 -
Vivi5g02542 356 Pfam Cupin 196 339 IPR006045 -
Vivi5g02542 356 Pfam Cupin 11 157 IPR006045 -
Vivi5g02542 356 SUPERFAMILY RmlC-like cupins 16 345 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02542 Vivi-Chr5 107296289 107298138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02542 35 351 Miscellaneous Gene Families AT2G18540 22.343 2.22e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02542 - - gmx:100795038 626.32