Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02540 ATGGCGCCATTGAACTCTCTGGAGAAAGAGTATCCCCTCATCGATCCTAACTTCCAAACTTTTTGCGCTTCCCACGCCATTTACTCTGTCGAAGATTTCCTCCTGCACGATCTCGACGCATTACTCACTTCCGCGGCCAATCATTCCACTTCCCAGAGATTGAAGCAGGGTATTCATCAGCTTCTGTCTATTGTCGATGCTCTACATCCGCCATTGCTTAATGGTTTGCAGCTTCTTGAAGACTCTAAACGGAATAAACATGTTTTGTCCACTGGTTGTGAACGGATTGATGCATTTCTCGGAGGTGGATTACGTGAAGGACAATTAACTGAGCTTGTTGGACCATCCTCTTCTGGCAAGACACAGGCTTGTTTGATGTCTGCCTCAACTGTTGCAAAGCATAAGTGTTCAGTTATATATTTAGATACTGGCAATTCCTTTTCACCTCAGCGGATTGCACATTTTGTTGGCCAGTCTTCTGATTATATCTCAGGCGATCAGAACGTATTAGACAGGATAATTTGCTACCCGGTGTTTGATGTATATCAGATGTTTGATCTGCTGCATCAACTGGAAATCAATTTTAGATCTGAGATTGACAAATCAGATCGTCATGTACAACTGCTTATTGTTGATTCAATCTCTTCACTGATTACTCCCATCCTTAGGGGAAGTGGTCCTCAGGGATACTCTTTAATGATATCTGTTGGGTTTCTATTGAAGAAGCTAGCACATGAGCATAATATTGCAGTGTTGGTGACAAATCATGTGGTGGGTGGGGAAGACGGTAATTCAAAACCAGCACTTGGAGAGAGTTGGAAGAGTGTCCCTCATGTAAGGCTTTTGCTCTCACGTGAATGTGGAGGCAATGTCTGCAACTTTTCAATAATCAAACATCCAGCTATGGCTTATGGTAGGACTGCAACTTCCACCCGTCTGTTTGTTTGA 948 0.4325 MAPLNSLEKEYPLIDPNFQTFCASHAIYSVEDFLLHDLDALLTSAANHSTSQRLKQGIHQLLSIVDALHPPLLNGLQLLEDSKRNKHVLSTGCERIDAFLGGGLREGQLTELVGPSSSGKTQACLMSASTVAKHKCSVIYLDTGNSFSPQRIAHFVGQSSDYISGDQNVLDRIICYPVFDVYQMFDLLHQLEINFRSEIDKSDRHVQLLIVDSISSLITPILRGSGPQGYSLMISVGFLLKKLAHEHNIAVLVTNHVVGGEDGNSKPALGESWKSVPHVRLLLSRECGGNVCNFSIIKHPAMAYGRTATSTRLFV 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02540 315 ProSiteProfiles RecA family profile 1. 85 257 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Vivi5g02540 315 PANTHER DNA REPAIR PROTEIN RAD51 HOMOLOG 4 1 309 - -
Vivi5g02540 315 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 305 IPR027417 -
Vivi5g02540 315 CDD Rad51D 101 299 IPR047323 -
Vivi5g02540 315 FunFam DNA repair protein RAD51 4 74 312 - -
Vivi5g02540 315 Pfam Rad51 84 300 IPR013632 -
Vivi5g02540 315 Gene3D - 72 310 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02540 Vivi-Chr5 107272148 107279917 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02540 K10871 - gmx:100780427 492.271