Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02531 ATGATGTATCGAAGAACCAAATCAATTAATCACAATCTCTTACGCCATTATCTTTACGCTAAAAACAATGCACAAACCTCATTCCACACTCAAACCCAAACCCAAACCCCAACTTCAAATCTCCGAAACCGCAAACACATTCCTTTCATAACCGAAATCAAACAAATTCAAACCTCAGAAGAAGCTTTATCTCTCTTCCACCACTACACCCAACTCGGTCACAAACACTATTACCCTTCCTACGCCGCATTGCTCTACAAACTCGCTCGTTCTAGAAACTTCCAAGCCGTTGAAACCATACTCCAACACATGAAAGACACCGATATTCAATGCAATGAGACCCTTTTCATTGCTCTGTTTCAACACTACGGTCCAGTGAAAGCCATTGAGCTCTTTCGTTCCATGAAGGAGTTCAATTGTGTGAGGACATTGCAGTCGTTGAATGCGCTTCTTAATGTTTTAGTTGATGGTTGTATGTTTGATGAGGCTAATGATGCTTTTGATCGATCCTATGAAATGGGGTTTCGTCCGAATACGGTTACGTTTAATATTATGATAAAGGGTTGGTTGAGGAAAGGCGAATGGGAGAAAGCATGTGAGGTGTTTGATGAAATGCTTGAGAGGAAAGTGCAGCCGAGTGTTGTTACTTATAATAGTTTTGTTGGGTTTTTGTCTAGGAAGGGGGATTTGGATAAAGCTATGATTTTGGTTGAGGATATGAGGCGGAAAGGGAAGCGTGCGAATGGAGTGACGTACGCACTTTTGATGGAAGGTTTGTGTTGTGTGGGGAAGTACGAGGAGGCTAAGAAGCTTATGTTTGATATGGCGTATCGTGGATGTAAGCCTCAGGTTGTGAATTTTTCTGTTTTGATGAATGATCTTGGGAAGAGAGGGAAGATTGATGAGGCGATGGTTTTGCTTCGGGAGATGAGAAAGAGGCGGCTTAAGCCGGATGTTGTGACTTATAATGTATTTGTAAATTATCTTTGCAAGGAAGGGAAGACGGAGGAAGCTTATAAAGTGTTAATCGAGATGCAGATTGGCGGTTGTCTTCCAAATGCAGCTACATATAGGATGATGCTTGATGGTTTGTGTCGGAATGGAGATTTTGAGGTGGGGCTGAATGTTTTGAATGCGATGTTGGCGAGTAGACATTGCCCGCAATCTGAAACGTTCAATTGTTTGGTTGTTGGGCTGTTGAAGTCTGGGAATATTGATGGTGGATGCTTTGTTTTGGAAGAGATGGAGAAGAGGAAGGTAGATTTTGATTTGGATAGCTGGGAAACTGTGATTAAGCATGCTTGCAGCGAGGATAATAACGGTAAAAGTACGCTTTTGAATATACTTTCATCTCTGTCCATCTAA 1365 0.4183 MMYRRTKSINHNLLRHYLYAKNNAQTSFHTQTQTQTPTSNLRNRKHIPFITEIKQIQTSEEALSLFHHYTQLGHKHYYPSYAALLYKLARSRNFQAVETILQHMKDTDIQCNETLFIALFQHYGPVKAIELFRSMKEFNCVRTLQSLNALLNVLVDGCMFDEANDAFDRSYEMGFRPNTVTFNIMIKGWLRKGEWEKACEVFDEMLERKVQPSVVTYNSFVGFLSRKGDLDKAMILVEDMRRKGKRANGVTYALLMEGLCCVGKYEEAKKLMFDMAYRGCKPQVVNFSVLMNDLGKRGKIDEAMVLLREMRKRRLKPDVVTYNVFVNYLCKEGKTEEAYKVLIEMQIGGCLPNAATYRMMLDGLCRNGDFEVGLNVLNAMLASRHCPQSETFNCLVVGLLKSGNIDGGCFVLEEMEKRKVDFDLDSWETVIKHACSEDNNGKSTLLNILSSLSI 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02531 454 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Vivi5g02531 454 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
Vivi5g02531 454 SUPERFAMILY TPR-like 64 342 IPR011990 GO:0005515
Vivi5g02531 454 Pfam PPR repeat family 317 366 IPR002885 -
Vivi5g02531 454 Pfam PPR repeat family 177 220 IPR002885 -
Vivi5g02531 454 NCBIfam pentatricopeptide repeat 250 282 IPR002885 -
Vivi5g02531 454 NCBIfam pentatricopeptide repeat 215 244 IPR002885 -
Vivi5g02531 454 NCBIfam pentatricopeptide repeat 287 319 IPR002885 -
Vivi5g02531 454 NCBIfam pentatricopeptide repeat 180 213 IPR002885 -
Vivi5g02531 454 NCBIfam pentatricopeptide repeat 147 179 IPR002885 -
Vivi5g02531 454 NCBIfam pentatricopeptide repeat 391 420 IPR002885 -
Vivi5g02531 454 NCBIfam pentatricopeptide repeat 356 387 IPR002885 -
Vivi5g02531 454 NCBIfam pentatricopeptide repeat 320 354 IPR002885 -
Vivi5g02531 454 Pfam PPR repeat 391 419 IPR002885 -
Vivi5g02531 454 Pfam Pentatricopeptide repeat domain 236 297 IPR002885 -
Vivi5g02531 454 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 40 327 - -
Vivi5g02531 454 Gene3D Tetratricopeptide repeat domain 348 447 IPR011990 GO:0005515
Vivi5g02531 454 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 282 IPR002885 -
Vivi5g02531 454 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 213 247 IPR002885 -
Vivi5g02531 454 Gene3D Tetratricopeptide repeat domain 207 276 IPR011990 GO:0005515
Vivi5g02531 454 Gene3D Tetratricopeptide repeat domain 277 347 IPR011990 GO:0005515
Vivi5g02531 454 Gene3D Tetratricopeptide repeat domain 18 206 IPR011990 GO:0005515
Vivi5g02531 454 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Vivi5g02531 454 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Vivi5g02531 454 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02531 148 446 Glycosyltransferase AT1G05670 30.769 2.68e-45 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02531 - - psat:127103206 799.275