Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02438 ATGTTATCTTTTGGTAGAAATTGCTTGAAAATTTGTAGCCACTTCAAAAGAAATAGCTCAAATGAAAATCTATGTTTAGGGTTTTTTCCTGAGCTATTTCTTCTCAATGATTCAATTGGGAAAAATTCAAACAAGATAATGCATTATCCCTTCCAAACCACTTATAATCATGTTTTGTTTCCACTTATTAGCTTTAATTCTCATTATTATTCAACTAGAGCTCCTTCAAGGTCTTACCGAAGAAGAGTTCGAAATCGGTTTTTGAAAGCAAATAAGCCTGTTTTAGACCAAGCACAGTTTCAGTTTGCACAGTCTCAGCTTCTCCCGAGGTTCACTCCTGAAGAATTATGCAATGTTATCGCTGGTCAACGCGATCCGTTAGTTTGTTTAGAGCTTTTTCATTGGGCGTCTCACCAGCCGAGGTTTCGGCATGATTTGTCGACGTTTCATGTCACTATAAAGAAGCTGGGTGATGCGAAAATGTATCAGGAAATGGATGATGTTGTGAACCAGTTGCTCGCGGTTCGTTCTATTGGTTCGGAATCGTTGTTTAATATGATAATTTATTATTTCACTGAGGCGCGGAAGTTGACGAAAGCTGTTAATGTGTTTAAGCACATGAAGAGTAGTAGGAACCCGAATTTTAGCTTTAGGCCTTCGATTAAAACGTATAATATTCTATTTGGTGCACTTTTGAGCAGAGGGTACAATACTGATATAAACCTTGTGTATATGGAGACTATGAGATGTTTGTTCAGGCAAATGGTGAACGATATGATAGAACCTGATATTTTTTCGTTAAATTCTATGATAAAAGGTTATGTGCTTTCTCTTCATGTTAACGATGCGTTGAGGATATTTCATCAGATGGGCGTTGTTTATGATTGCGAACCCAATTCTTTAACTTACGATTACTTGATTCATGGGTTGTGTGCCAAAGGAAGAACAGAGAATGCCAAGGAATTGTATCATGAAATGAAGACCAAAGGTTTCACCCCGAATAGTAAATCTTATAATTCGCTTGTCAGTTCTTTGGCACTCGTCGGAGAGATCGAGGATGCAGTAAATTATCTATGGGAGATGATTGAAAAGCAGAGATCAGTTGATTTTATTACATACAGAACTGTACTGGATGAAATATGTAGACGCGGAAAGGTTCAAGAGGCCATGAGATTTCTGGAGGAGTTGCAAGAAAAGGACCTCGTAGATGGACATACTTACAGGAAGCTTCTTTATGTGCTTGAAGATGATTATGGGAATTCAGAAGACAGAATTGATTAA 1281 0.3763 MLSFGRNCLKICSHFKRNSSNENLCLGFFPELFLLNDSIGKNSNKIMHYPFQTTYNHVLFPLISFNSHYYSTRAPSRSYRRRVRNRFLKANKPVLDQAQFQFAQSQLLPRFTPEELCNVIAGQRDPLVCLELFHWASHQPRFRHDLSTFHVTIKKLGDAKMYQEMDDVVNQLLAVRSIGSESLFNMIIYYFTEARKLTKAVNVFKHMKSSRNPNFSFRPSIKTYNILFGALLSRGYNTDINLVYMETMRCLFRQMVNDMIEPDIFSLNSMIKGYVLSLHVNDALRIFHQMGVVYDCEPNSLTYDYLIHGLCAKGRTENAKELYHEMKTKGFTPNSKSYNSLVSSLALVGEIEDAVNYLWEMIEKQRSVDFITYRTVLDEICRRGKVQEAMRFLEELQEKDLVDGHTYRKLLYVLEDDYGNSEDRID 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02438 426 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Vivi5g02438 426 Gene3D Tetratricopeptide repeat domain 118 292 IPR011990 GO:0005515
Vivi5g02438 426 Gene3D Tetratricopeptide repeat domain 295 421 IPR011990 GO:0005515
Vivi5g02438 426 Pfam PPR repeat 184 210 IPR002885 -
Vivi5g02438 426 Pfam PPR repeat 266 290 IPR002885 -
Vivi5g02438 426 Pfam PPR repeat family 298 346 IPR002885 -
Vivi5g02438 426 NCBIfam pentatricopeptide repeat 183 210 IPR002885 -
Vivi5g02438 426 NCBIfam pentatricopeptide repeat 302 334 IPR002885 -
Vivi5g02438 426 NCBIfam pentatricopeptide repeat 266 299 IPR002885 -
Vivi5g02438 426 NCBIfam pentatricopeptide repeat 371 401 IPR002885 -
Vivi5g02438 426 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Vivi5g02438 426 PANTHER ATPASE EXPRESSION PROTEIN 3 74 412 - -
Vivi5g02438 426 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 333 IPR002885 -
Vivi5g02438 426 Pfam PPR repeat 369 395 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02438 Vivi-Chr5 103313858 103316738 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02438 298 411 Glycosyltransferase AT1G05670 29.565 5.27e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02438 - - gmx:102666460 594.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g02438 5 103313858 103316738 Vivi5g02438 5 103313858 103316738 ECH