Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02425 ATGATGTTTAAGAAGCAATCTCATCTCTTCTCCTTCTCCCTTGCAATACTAATTTCTCTTTTGTATTCCACCACAATTACTTTATCCCAATTATCACCTGCTAATGCTCCAATACAACCTACACTACCTTCCCCAACCACGCCAGCTGCATCCCCCAAACCATTGGTACCTTCATTACCGGAATCACCTACTGACTCCACACCTGACACCGCAGCTGTTGACATAGTCGGAATCCTGAGAAAAGCCAAGTCATTCAACGTCCTAATCCGACTCATGAAAACAACTCAATTAATCAACCAACTCAATTCGCAACTATTGACTACAAAAACAGGTGGATTAACAATTCTTGCACCAGATGACAGCGCGTTCTCAGAACTCAAAGCCGGATTCCTCAACTCTCTTTCTGACGGACAGAAACTCGAACTCTTACAGTTCCACGTTATTTCCGACTACGTATCAAGCTCTAACTTTGATATCCTAACCAACCCAGTGAGAACACTTGCAGGAGCTAAACCAGGAAAGGTGGAGCTGAACGTTGTGAGTTACGGTGGAAGTGTCAACATATCAACGGGAGAAGTGAACACTACAATCAATGGCATTATATATACCGATAAGCATCTTGCTATCTATAAAGTTGGCAAAGTGCTTCTTCCTATGGATTTCTTTTCAGTCGCTAAGGCACCAAAGAAGGGACCTTCTTTGGCGCCGGAACCTTCTGCACTGACTCCAAAAGCCGAAAAGGAGAAGCCGCTATCACCAGATTCTTCTGATTCATCTCAAGCTAAGCCCTCAAATGATAATTCTGGTTCTGTAAAAATCAATGCCTATGGAAAGTGGATATCTCTTTTCCTTGGAGCAGTTATGTTAACTTCATTGTCTGCATAA 885 0.4271 MMFKKQSHLFSFSLAILISLLYSTTITLSQLSPANAPIQPTLPSPTTPAASPKPLVPSLPESPTDSTPDTAAVDIVGILRKAKSFNVLIRLMKTTQLINQLNSQLLTTKTGGLTILAPDDSAFSELKAGFLNSLSDGQKLELLQFHVISDYVSSSNFDILTNPVRTLAGAKPGKVELNVVSYGGSVNISTGEVNTTINGIIYTDKHLAIYKVGKVLLPMDFFSVAKAPKKGPSLAPEPSALTPKAEKEKPLSPDSSDSSQAKPSNDNSGSVKINAYGKWISLFLGAVMLTSLSA 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02425 294 ProSiteProfiles FAS1/BIgH3 domain profile. 72 207 IPR000782 -
Vivi5g02425 294 MobiDBLite consensus disorder prediction 228 270 - -
Vivi5g02425 294 MobiDBLite consensus disorder prediction 254 270 - -
Vivi5g02425 294 SMART fasc_3 114 219 IPR000782 -
Vivi5g02425 294 Pfam Fasciclin domain 84 218 IPR000782 -
Vivi5g02425 294 Gene3D FAS1 domain 58 218 IPR036378 -
Vivi5g02425 294 MobiDBLite consensus disorder prediction 39 68 - -
Vivi5g02425 294 FunFam Fasciclin-like arabinogalactan protein 11 58 218 - -
Vivi5g02425 294 SUPERFAMILY FAS1 domain 66 219 IPR036378 -
Vivi5g02425 294 MobiDBLite consensus disorder prediction 39 61 - -
Vivi5g02425 294 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 8 275 IPR045003 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02425 Vivi-Chr5 102645837 102647015 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02425 - - tpra:123919982 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g02425 5 102645837 102647015 Vivi5g02425 5 102645837 102647015 ECH