Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02424 ATGACGTTGAATAAGCAATCTCATCTTTTGTCCTTCTCACTTGCAATACTAATTTCTCTTTTATATTCTATCACCGCTACTTTATCTCAATTATCACCTGCTAATGCTCCTATACAACCTACACTTCCAGCTCCAACCCAACCAGCCGCAGCCCCTAAGCCATTGGTACCTTCCTTACCAGACTCACCTAGTGACTCCACTCCTGACACTGCAGGCACCGTTGACATCGTCGGAATCCTGAGAAAGGCAAAGTCATTCAATGTCTTAATCCGTCTCATGAAAACAACTCAATTGATCAACCAACTCAATTCGCAACTATTGACTACAAAAACAGGCGGATTAACAATTCTTGCACCAGATGACAGCGCGTTCTCAGAACTCAAAGCAGGATTCCTCAACTCTCTTTCCGATGGACAGAAACTCGAGCTCTTACAGTTCCACGTTATTTCAGACTACGTATCAAGCTCTAATTTTGATATTCTAACTAACCCAGTGAGAACACTTGCCGGAGGTAAACCAGGAAAGGTAGAACTGAATGTTGTGAGTTACGGTGGAAGTGTCAACATCTCAACAGGTGAAGTGAACACTACAATCAATGGCATTATATATACCGATAAACATCTTGCTATCTATAAAGTTGGCAAGGTGCTTCTCCCAATGGAATTCTTTTCCGTTGCTAAGGCACCTGCAAAAGGACCATCTTTGGCACCAGAACCTTCAACTGATACAGCAAAGGCACCTAAATCCGATAAGGATACATCTTCAGATTCGTCGCAGGTAACTAATCCAAAAGAACAGAATTCTGGCTCAGTGAAGATTGAGTATGGAAAATGCGTGGCTCTTGGGCTTGTATTAGCTTTGGCTGCGATGGTGCAGACCCAATACTGA 888 0.4291 MTLNKQSHLLSFSLAILISLLYSITATLSQLSPANAPIQPTLPAPTQPAAAPKPLVPSLPDSPSDSTPDTAGTVDIVGILRKAKSFNVLIRLMKTTQLINQLNSQLLTTKTGGLTILAPDDSAFSELKAGFLNSLSDGQKLELLQFHVISDYVSSSNFDILTNPVRTLAGGKPGKVELNVVSYGGSVNISTGEVNTTINGIIYTDKHLAIYKVGKVLLPMEFFSVAKAPAKGPSLAPEPSTDTAKAPKSDKDTSSDSSQVTNPKEQNSGSVKIEYGKCVALGLVLALAAMVQTQY 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02424 295 Gene3D FAS1 domain 59 219 IPR036378 -
Vivi5g02424 295 MobiDBLite consensus disorder prediction 39 70 - -
Vivi5g02424 295 FunFam Fasciclin-like arabinogalactan protein 11 58 219 - -
Vivi5g02424 295 Pfam Fasciclin domain 85 219 IPR000782 -
Vivi5g02424 295 SMART fasc_3 115 220 IPR000782 -
Vivi5g02424 295 MobiDBLite consensus disorder prediction 253 268 - -
Vivi5g02424 295 SUPERFAMILY FAS1 domain 71 220 IPR036378 -
Vivi5g02424 295 MobiDBLite consensus disorder prediction 231 268 - -
Vivi5g02424 295 ProSiteProfiles FAS1/BIgH3 domain profile. 73 202 IPR000782 -
Vivi5g02424 295 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 8 272 IPR045003 -
Vivi5g02424 295 MobiDBLite consensus disorder prediction 39 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02424 Vivi-Chr5 102639797 102640850 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02424 - - gmx:100819833 374.015