Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02404 ATGGCGGCCAGTGCTGAACTATCTCCCTCTAAAATCCTAGACACAATCAACCCTCAGGATTCCACCTTAGAGCCACCTCTAACAACTCCACTAGACGCCCAAACCAACGAACCGACCGAGAAACGGAAGAGAGACGATTCCGACGGAAACACCAACACCGATGACAACCGTTCTCTCCACCCGCTATGGAAAACCAGTCTATGTTCCTACTTCAGAAAACATGCCACGTGCAGCCACGGCGATACCTGCCGATACGCGCACAGCGAGGAGGAGCTCCGGCCTCGACCGGACAGTACATGGGACCCGACGTCTGAGAGAGGTAAGAAGGCTTTGAAATCCGTTACCGGCGAGAAAATTGCAGTTAAAGACGGTGTAATGATGACGGAGCTTGTCGACGATATTGATGGCGATGGAGGTGATGAAGGTTTTGCATCCAACCAAGCGCTCAGCAAATGTTTAGTGCATTTGCCGATGAAATGGAGCTCTGAGAATTTGAGGAATTTCCTCACTGAGCAGGGTATACCTTTCAAGCACGCGAAGACGAAGAAAGGTATGGCCATTGGTTTCGTTACATTTGAAGATGAAGAACAACTGAAGAGTTCTTGTAAGGATTTAGAAGGGAAACAAATAGGCAACAAAACAATAGAGATAGCTGATGTTAATCCTCGATCATTTGAGAAGAAAAGTAACTCTAGTGTTCCTTCAAAGGGGGCATTGGATGATGAACCAAATGATGATAGTTTGGTTATTGATGGTTCCGAGTCAAAGAAAAGAAGCTCGCGTGAAGTCGTGACTCCTCTGGCCCATTTGTCCTATGCTGATCAGTTGGAGCAGAAAAAATACTCTCTCATGCAGATTCTCAAGAAGCTTCCTAGAAATGCTCGTAAAGCTTGTCCAAATGGTGTTCCAGTTCCTGAATGGATTCTCAAGTCTAGGGAAATAGGTGGTCTTCCATGCAATCTAGAGGGTATTATTGAATCACCAATTGTAAATGGATATCGTAATAAGTGTGAGTTTTCTATTGGATATTCAATGGAAGGCAAAGCAACAGTGGGCTTCAGCCTTGGAAATTTTAGGGAAGGTGTAACAGCAGTTGAGGAACCAGTGAACTGCCCAAATATTTCTACCATTGCTTGCAAATATGCTGCTATCTTTCAAGAATTTCTACAGCACACTGAATTACCAGTTTGGAACAGATTTAAAAATTGTGGATTTTGGCGTCAATTGACGGTTCGAGAAGGGAGGTCAAATGGGGATACTGTTGATGCTGAGACTTTTGACGGTATTGCAGAGGTCATGCTTATTGTGCAGGTCTCTACTGCAAGTTTTGATAATGTACAAGTAGCTGCTGAATTTAAGAGGCTTGCTCAGGCATTTGTTACAGGAGCTACCTCTCATTGTCCAACTTTGCCCCTTACAGCTCTGATTGTTCAGGATCACCAAGGAATATCCAATGTAGCACCATCTGATGCACCGCTGCATTCACTTCCCATAGCAGCGGGTGATCCTGAGAGAGATGAAAGCATTAGTGCTGCAGATGTTAGAATTCATGATTATATCAGCAATCTCCGATTCTCCATATCTCCAACCTCATTTTTTCAGGTTAACACACTTGCTGCCGAAAAGTTATACTCCCTTGCTGGAGATTGGGCATGCTTAGGTCCTGATACATTGCTATTTGATATATGCTGTGGGACAGGAGCAATTGGCCTGACATTAGCACATCGTGTTGGAATGGTTATTGGAATTGAAATGAATGCTGCTGCTGTATCTGATGCTCATAAGAATGCTGAGAATAATGGCATAAAAAACTGTAGATTTATCTGTTCGAAGGCAGAGCAAGTTATGGGATCTCTGTTAAAGGAATACCTTAATGTGCCCAAGGAACAACTTGATGATCCTAATACCTGTGGAACTGTTGATGACATTCCTGAAGACAGTGCCTGCCCAGAGCCCGAAAATGGTAAACAGGCATCCCATTGTTCTGAAAATAACAATTCAGAAGTTGAAAATGAGGTTCCGAAGGAAAGCACTTCTGAAAATGGGAATACTTCCATGCAACAATTTAAAAATGTTGTTGCTATTGTTGATCCTCCCCGTGCTGGACTTCATCCAACTGTGATAAAAGCTTTAAGAACCCATACACGTCTGCGAAGACTCGTTTATATATCATGTAATCCAGAAAGTTTGGTGGCAAATGCTATTGAGCTCTGTACGCCATCCCCCACAGAAATCGAGAGAGGAAATAAAGACAACAGAGGATGGAGAAGGATGAGTAGTGCTGGTCTAGCTAGGCATAGGGCAAAATCCATGCCCATTTCAGAGGCCTTCAAACCCATAAAAGCCATGGCTGTTGATCTTTTTCCACATACTCCACATTGTGAATTGGTTATGCTTCTTGAAAGGTAG 2409 0.4359 MAASAELSPSKILDTINPQDSTLEPPLTTPLDAQTNEPTEKRKRDDSDGNTNTDDNRSLHPLWKTSLCSYFRKHATCSHGDTCRYAHSEEELRPRPDSTWDPTSERGKKALKSVTGEKIAVKDGVMMTELVDDIDGDGGDEGFASNQALSKCLVHLPMKWSSENLRNFLTEQGIPFKHAKTKKGMAIGFVTFEDEEQLKSSCKDLEGKQIGNKTIEIADVNPRSFEKKSNSSVPSKGALDDEPNDDSLVIDGSESKKRSSREVVTPLAHLSYADQLEQKKYSLMQILKKLPRNARKACPNGVPVPEWILKSREIGGLPCNLEGIIESPIVNGYRNKCEFSIGYSMEGKATVGFSLGNFREGVTAVEEPVNCPNISTIACKYAAIFQEFLQHTELPVWNRFKNCGFWRQLTVREGRSNGDTVDAETFDGIAEVMLIVQVSTASFDNVQVAAEFKRLAQAFVTGATSHCPTLPLTALIVQDHQGISNVAPSDAPLHSLPIAAGDPERDESISAADVRIHDYISNLRFSISPTSFFQVNTLAAEKLYSLAGDWACLGPDTLLFDICCGTGAIGLTLAHRVGMVIGIEMNAAAVSDAHKNAENNGIKNCRFICSKAEQVMGSLLKEYLNVPKEQLDDPNTCGTVDDIPEDSACPEPENGKQASHCSENNNSEVENEVPKESTSENGNTSMQQFKNVVAIVDPPRAGLHPTVIKALRTHTRLRRLVYISCNPESLVANAIELCTPSPTEIERGNKDNRGWRRMSSAGLARHRAKSMPISEAFKPIKAMAVDLFPHTPHCELVMLLER 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02404 802 ProSiteProfiles Zinc finger C3H1-type profile. 62 90 IPR000571 GO:0046872
Vivi5g02404 802 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 79 802 IPR045850 -
Vivi5g02404 802 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 215 IPR000504 GO:0003723
Vivi5g02404 802 MobiDBLite consensus disorder prediction 635 685 - -
Vivi5g02404 802 Pfam tRNA (Uracil-5-)-methyltransferase 686 737 IPR010280 GO:0006396|GO:0008173
Vivi5g02404 802 SMART c3hfinal6 62 89 IPR000571 GO:0046872
Vivi5g02404 802 Pfam Methyltransferase domain 559 617 IPR025714 -
Vivi5g02404 802 ProSitePatterns RNA methyltransferase trmA family signature 1. 697 729 IPR030390 -
Vivi5g02404 802 Gene3D Vaccinia Virus protein VP39 503 801 IPR029063 -
Vivi5g02404 802 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 265 802 IPR029063 -
Vivi5g02404 802 MobiDBLite consensus disorder prediction 221 257 - -
Vivi5g02404 802 SUPERFAMILY RNA-binding domain, RBD 155 229 IPR035979 GO:0003676
Vivi5g02404 802 MobiDBLite consensus disorder prediction 239 257 - -
Vivi5g02404 802 MobiDBLite consensus disorder prediction 87 108 - -
Vivi5g02404 802 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 263 802 IPR010280 GO:0006396|GO:0008173
Vivi5g02404 802 MobiDBLite consensus disorder prediction 1 58 - -
Vivi5g02404 802 MobiDBLite consensus disorder prediction 36 53 - -
Vivi5g02404 802 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 63 89 IPR000571 GO:0046872
Vivi5g02404 802 CDD AdoMet_MTases 561 615 - -
Vivi5g02404 802 MobiDBLite consensus disorder prediction 10 35 - -
Vivi5g02404 802 SUPERFAMILY CCCH zinc finger 60 94 IPR036855 GO:0046872
Vivi5g02404 802 Gene3D - 153 231 IPR012677 -
Vivi5g02404 802 Gene3D - 56 95 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02404 K15332 - qsa:O6P43_028361 1120.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g02404 5 102064261 102069912 Vivi5g02404 5 102064261 102069912 ECH