Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02355 ATGGCCGGTAAAAGCGGAACTCCGGCGACCTACTCACCGTCCCCAACCACCGATAAAAACAAATCAACACTTTTCAAGCAAGATTGGACCCGACCCGACGGCCGTGGTTTCCACCAGTGTAGACCCGCATTTTTCAGGACTGGTGCTGTGAATGCTGCATCAGGATCTGCGTATGCCGAATTCGGAAACACCAAAGTCATTGTTTCTGTATTTGGGCCGAGAGAGAGCAAGAAAGCGATGTTGTACAGTGATTCGGGGCGTTTGAATTGTAATGTTAGCTATACAACATTTTCAACGCCGGTTCGTGGACAGGGTTCAGATCACAAAGAATATAGTTCTATGCTTCATAAAGCTTTGGAGGGTGCCATAATATTGGAGAGTTTCCCCAAGACTACTGTGGATGTTTTTGCATTGGTGCTGGAATCTAGTGGAAGTGATCTTCCAGTTGTCATATCAGTTGCTAGTCTTGCCTTGGCTGATGCTGGAATACTGATGTATGACCTTGTAGCCGCAGTTTCTGTGTCATGTATCGGTAAGAGCCTTGTCATTGATCCTATTTCGGAGGAGGAAAACTGCCAAGACGGAAGCTTAATGATTACTTGCATGCCTTCTCGCTATGAAATCACCCAACTGACAGTTACTGGAGAATGGTCCACCCCAAAGATTAATGAGGGGATGCAGCTGTGTTTGGATGCTTGTGCAAAGCTTGCTAAGATTATGAGGTCATGTTTGAAAGAATCCGCTTCTGATGCACTGGATGAAAGCTCTTAA 771 0.4578 MAGKSGTPATYSPSPTTDKNKSTLFKQDWTRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMLYSDSGRLNCNVSYTTFSTPVRGQGSDHKEYSSMLHKALEGAIILESFPKTTVDVFALVLESSGSDLPVVISVASLALADAGILMYDLVAAVSVSCIGKSLVIDPISEEENCQDGSLMITCMPSRYEITQLTVTGEWSTPKINEGMQLCLDACAKLAKIMRSCLKESASDALDESS 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02355 256 CDD RNase_PH_MTR3 40 246 - -
Vivi5g02355 256 MobiDBLite consensus disorder prediction 7 23 - -
Vivi5g02355 256 Pfam 3' exoribonuclease family, domain 2 167 227 IPR015847 -
Vivi5g02355 256 FunFam Exosome complex component RRP41-like 10 249 - -
Vivi5g02355 256 Pfam 3' exoribonuclease family, domain 1 39 163 IPR001247 -
Vivi5g02355 256 SUPERFAMILY Ribonuclease PH domain 2-like 165 250 IPR036345 -
Vivi5g02355 256 PANTHER EXOSOME COMPLEX COMPONENT 31 244 - -
Vivi5g02355 256 MobiDBLite consensus disorder prediction 1 30 - -
Vivi5g02355 256 Gene3D - 17 255 IPR027408 -
Vivi5g02355 256 SUPERFAMILY Ribosomal protein S5 domain 2-like 27 194 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02355 Vivi-Chr5 99853168 99857482 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02355 K12587 - gmx:100816271 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g02355 5 99853168 99857482 Vivi5g02355 5 99853168 99857482 ECH