Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02263 ATGGGTCGAAAGAGTGCTAAGAAAATGGTGGTTAAATCCACAAAGAAAGTCGTAGAAGAAAGTGTTCAAGTTTCAGTTATAAGCAGCAACAAAAGATTAACACGTAGAAACAAAGATGCTCAACCAGAAGACGAAGAAAAAGAGCAACAAGTAAGAAGAGTCATTCCCGTTCTTGAACCTCGTGAAGAAAAAGGAGACGGTTCAACTTCAAGCACAACAACAATCACTACTGAAAACAAAAACACCGACCAACAAAACACACCAAAAGAGGAAGAACAACAAAACAGAAACATTAATATCAAGAACAAGACAAAAAAAGTGAACAACAATAACAATGGTAAGAAGAAGAGGAAGAAGAGTGTGGAAGGGTATCAAAGGTATGTGTACAAGGTGTTAAAGCAAGTGCATCCTGAAATGGGGGTTTCGTCGAAATGCATGGTGATTTTGAATAATTTTATGAATGATATGTTTGAGAGACTAGCTTGTGAGGCTAGTAGGTTGAAGGATTATACTGGAAACATGACATTGTCATCCAGGGAGATTCAAGGAGCGGTTAAGCTTGTTTTGCCTGGTGAGCTTGGGAAACATGCTGTTGCTGAAGGGATTAAAGCTGTGAACAACTATACGGCTTATGAATGA 639 0.385 MGRKSAKKMVVKSTKKVVEESVQVSVISSNKRLTRRNKDAQPEDEEKEQQVRRVIPVLEPREEKGDGSTSSTTTITTENKNTDQQNTPKEEEQQNRNINIKNKTKKVNNNNNGKKKRKKSVEGYQRYVYKVLKQVHPEMGVSSKCMVILNNFMNDMFERLACEASRLKDYTGNMTLSSREIQGAVKLVLPGELGKHAVAEGIKAVNNYTAYE 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02263 212 PANTHER HISTONE H2B 101 209 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vivi5g02263 212 MobiDBLite consensus disorder prediction 32 66 - -
Vivi5g02263 212 MobiDBLite consensus disorder prediction 67 83 - -
Vivi5g02263 212 PRINTS Histone H2B signature 182 195 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vivi5g02263 212 PRINTS Histone H2B signature 124 142 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vivi5g02263 212 PRINTS Histone H2B signature 143 163 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vivi5g02263 212 PRINTS Histone H2B signature 165 182 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vivi5g02263 212 PRINTS Histone H2B signature 195 208 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vivi5g02263 212 Pfam Core histone H2A/H2B/H3/H4 75 187 IPR007125 GO:0003677
Vivi5g02263 212 SMART h2b3 114 210 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vivi5g02263 212 FunFam Histone H2B 70 211 - -
Vivi5g02263 212 MobiDBLite consensus disorder prediction 84 99 - -
Vivi5g02263 212 SUPERFAMILY Histone-fold 100 210 IPR009072 GO:0046982
Vivi5g02263 212 Gene3D Histone, subunit A 77 211 IPR009072 GO:0046982
Vivi5g02263 212 MobiDBLite consensus disorder prediction 1 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02263 Vivi-Chr5 95253182 95254084 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02263 K11252 - gmx:100786873 202.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g02263 5 95253182 95254084 Vivi5g02263 5 95253182 95254084 ECH