Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02230 ATGCGCTCCAAAGACAGAATCGCTTACTTTTACGACGGTGATGCGGGCAGTGTTTACTTTGGGCCGAACCATCCCATGAAGCCTCACCGCCTTTGCATGACTCACCATCTTGTTCTCTCGTATGATCTTCATAAGAAGATGGAGATTTATCGCCCACACAAAGCTTATCCTGTTGAGCTTGCCCAGTTTCATTCCTCTGATTATGTTGAGTTTTTGCACAGGATTACACCTGACACTCAGCACTTGTTCTCAGATGAACTGTCCAAATATAATCTCGGAGAAGACTGCCCTGTATTTGACAACTTATTTGAATTTTGTCAGATTTATGCTGGTGGAACTATAGATGCTGCACGTCGACTGAACAATCAACTGTGTGATATTGCTATTAACTGGGCCGGTGGACTACATCATGCCAAGAAATGTGAAGCCTCTGGATTTTGCTACATCAATGACTTGGTTTTAGGGATTTTAGAGCTTCTTAAACGTCATGCCCGTGTTTTATACATTGATATAGATGTGCACCATGGAGATGGTGTAGAAGAAGCCTTCTACTTTACTGACAGGGTGATGACTGTCAGTTTTCACAAGTATGGAGATATGTTCTTTCCAGGAACTGGTGATGCTAAGGAAATAGGAGAAAGAGAAGGGAAGTTTTATGCAATAAATGTCCCACTCAAAGATGGAATTGATGACTCTAGCTTCACTAGACTTTTCAAGACTATTATTTCCAAAGTAGTTGAAACATATCAACCTGGTGCAATAGTTCTCCAGTGTGGAGCAGATTCACTTGCTGGAGATCGCTTGGGTTGCTTCAATCTCTCTATTGATGGTCATGCTGAATGTGTTAGATTCGTGAAGAGATTTAATGTGCCCTTACTGGTCACTGGAGGTGGGGGATACACAAAAGAAAATGTTGCTCGATGTTGGGCGGTTGAAACTGGAGTTCTTCTAGATACTGAGCTTCCAAACGAGATTCCAGAGAATGATTATATTAAATATTTTGGACCAGACTTCTCATTGAAGATTCCAAATGGGCACATAGAAAATTTAAACAGCAAATCATATCTTAGCACTATAAAAATGCAAGTCTTGGAAAATCTACGCAGCATACAACATGCTCCGAGCGTGCAAATGCAAGAGGTCCCACCTGACTTCTACATTCCTGATCTCAATGAAGATTTGCAGAACCCTGATGAGCGCATTGATCAACACACTCAAGACAAGCACATCCAGCGGGATGATGAATATTATGAAGGTGACAACGACAATGATCATCAAACGGATCTTTGA 1290 0.4147 MRSKDRIAYFYDGDAGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSSDYVEFLHRITPDTQHLFSDELSKYNLGEDCPVFDNLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKRHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKYGDMFFPGTGDAKEIGEREGKFYAINVPLKDGIDDSSFTRLFKTIISKVVETYQPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKRFNVPLLVTGGGGYTKENVARCWAVETGVLLDTELPNEIPENDYIKYFGPDFSLKIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPDLNEDLQNPDERIDQHTQDKHIQRDDEYYEGDNDNDHQTDL 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02230 429 MobiDBLite consensus disorder prediction 383 429 - -
Vivi5g02230 429 PIRSF HDAC_I_euk 1 429 IPR003084 GO:0004407|GO:0016575
Vivi5g02230 429 PANTHER HISTONE DEACETYLASE 2-RELATED 3 351 - -
Vivi5g02230 429 SUPERFAMILY Arginase/deacetylase 6 370 IPR023696 -
Vivi5g02230 429 PRINTS Histone deacetylase signature 111 131 IPR003084 GO:0004407|GO:0016575
Vivi5g02230 429 PRINTS Histone deacetylase signature 152 168 IPR003084 GO:0004407|GO:0016575
Vivi5g02230 429 PRINTS Histone deacetylase signature 90 107 IPR003084 GO:0004407|GO:0016575
Vivi5g02230 429 PRINTS Histone deacetylase signature 229 247 IPR003084 GO:0004407|GO:0016575
Vivi5g02230 429 PRINTS Histone deacetylase signature 26 43 IPR003084 GO:0004407|GO:0016575
Vivi5g02230 429 PRINTS Histone deacetylase signature 59 77 IPR003084 GO:0004407|GO:0016575
Vivi5g02230 429 PRINTS Histone deacetylase signature 212 225 IPR003084 GO:0004407|GO:0016575
Vivi5g02230 429 Gene3D Histone deacetylase domain 1 382 IPR037138 -
Vivi5g02230 429 Pfam Histone deacetylase domain 24 313 IPR023801 -
Vivi5g02230 429 MobiDBLite consensus disorder prediction 393 429 - -
Vivi5g02230 429 FunFam Histone deacetylase 1 382 - -
Vivi5g02230 429 PRINTS Histone deacetylase superfamily signature 133 156 IPR000286 -
Vivi5g02230 429 PRINTS Histone deacetylase superfamily signature 165 180 IPR000286 -
Vivi5g02230 429 PRINTS Histone deacetylase superfamily signature 251 261 IPR000286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02230 Vivi-Chr5 92468362 92474110 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02230 K06067 - zju:107410510 842.032