Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02200 ATGAAGGTTCATGAAGCGAGGTCGCATGTTCATCATGCACATGGGGAAGAAGAGAAAGTGATGACAAGGAAACAGAAAGCAGAATCCAAGGGACAAGAAGTTGAACATTCTCCTAAAAAGGCTAAGGTGGAAACTGAAGATGGTCACATTAATGGAAAATCTGCAGCTAATGTTGAACACGAGTATGATGAGTTTTGTAAGACCACTAATGAGAAACTGTCTTTGGAGCAAATGAAAGAGATTCTTGAGACTAATGGTCTTGATTCCTCTGGCTCTGATATCGAAGTTACAAGAAGATGCCAAGACTTGCTGTTTTTTGGTGCATTAGAGAAATGTTTGGTTTGCAATGGCAATTTGGAGTTTGATGGAAGACGTTATGCTTGTAGAGGGTTCTACAGTGAATGGTCTAGTTGCCCTTTCAGCACAAGGGACCCTCCAAGGAAAAAGGAACCCATTAAGCTACCAGATTCTGTTCAGAACTCTCCAATTTCAGATTTGTTGAAGAAATATCAGGATCCTAGCCAAAGGCCTCAAAGGGATTTAGGCTTGGCTATAAAGCCTTTTACTGGAATGATGATTTCTCTGATGGGTCGTCTTAATCGGACACATCAATATTGGAAAACAACTATAGAAAAGCAAGGAGGGAAGGTTACAAACTCTATTATTGGTGCAACTTGTTTGGTGGCTTCGCCTGCTGAGCGAGCACGTGGTGGAACATCCAAGCTCGCAGAAGCCATGGAGAGAGACATACCTGTGGTTAGGGAGGCTTGGTTAACTGACAGCATCGAAAAGCAAGAACCACAACCTTTGGAAGCTTATGATCTTGTATCTGATCTTTCTGTGGCTGGCAAGGGAATCCCCTGGGAGAAACAAGATCCTGGGGAGGAGGCTATTGAATCACTCTCAGCAGATCTCAAGCTTTATGGCAAGAGAGGAGTCTACAAAGATACCAAATTGCAGGAACAAGATGGGAAGATATTTGACAAAGATGGGATATTGTACAACTGTGCCTTCTCTGTTTGTGACCAAGGGAGAAAACTTAATGACTACTGTATAATGCAACTGATTGTTGGCCCAGAGAATCGTTTGCATCTGTATTTCAAGAAAGGAAGAGTGGGGGACGATCCAAACGCGGAGGAGCGATTAGAAGAGTGCGAGAACGAGGGCAGTGCTATCAAAGAGTTTGTGAGGCTCTTTGAGGAATTAACAGGAAATGAGTTTGAATCATGGGAAAGAGAGAAGAAGTTTCAGAAGAAGCCACTAAAGTTTTACCCTATTGACATGGATGATGGAGTTGAAGTTCGACATGGGGCGTTAGGACTTCGACAGCTGGGGATAGCAGCGACACACTGTAAACTTGAGCCTATGGTTGCAAAGTTTATGAAGGTTTTGTGCAGCCAGGAGATTTATAAGTATGCATTGATGGAGATGGGTTATGACTCTCCAGACCTTCCAATAGGAATGGTTACAAATCTTCACCTGCAAAGATGTGAAGAAGTTCTGTTGGAATTCATTGAGAAAATGAAATCATTGAAAGAGACAGGGCCCAAGGCTGATGCTATTTGGTCTGATTTTAGCCAGAGATGGTTCACTCTGATGCACTCCACAAGGCCTTTCATTTTTAGAGATTATCAAGAGATTGCAGATCATGCTGCTGCAGCACTGGAGGGTGTTAGAGATATAACCCTTGCTTCTCACCTCATTGGAGATATGAGTGGCGCTACCATTGATGATCCATTATCCGCCACGTACAAGAAATTGGGTTGCTCAGTTTCTGCTCTGGAGAAAAATTCAAATGACTATGAGATGATAGTGAAGTACCTTGAAAAAACTTATGAGCCTGTCAAAGTTGGTGACATTGAATATGGGGTTTCAGTTGAAAACATCTTTGCTGTGGAACCAAGTGCTTGCCCTTCTTATGAAGATATAGTAAAGCTTCCAAATAAGGTTCTTCTATGGTGTGGATCGCGAAGCTCAAATCTTTTGAGGCACTTGCACAAGGGGTTCTTGCCAGCTATATGTTCACTACCTGTTCCAGGTTACATGTTTGGAAAAGCCATTGTTTGCTCAGATGCTGCAGCAGAGGCTGCAAGATATGGTTTTACTGCTGTAGACAGACCAGAAGGGTTCTTGGTTTTGGCCATTGCTTCACTGGGAAATGAGATTACTGAGTTGAAAAGCCCACCTGAGGATACAACATCTTTGGAGGAAAACAAGATTGGAGTGAAGGGGCTTGGGAAGAAGAAAACAGATGAATCAGAGCACTTTGTGTGGAAAGATGACATAAAAGTTCCTTGTGGTAGAATAATTGCCTCAGAGCATGAAGATAGTCCCTTGGAATACAATGAGTATGCTGTCTATGATCCTAAGCAGGTACGTATATGCTACTTGGTGGGGGTGAAGTTTGAAGAGAATGGTGCCGTGATAGACACGGCAGAGTAA 2442 0.4283 MKVHEARSHVHHAHGEEEKVMTRKQKAESKGQEVEHSPKKAKVETEDGHINGKSAANVEHEYDEFCKTTNEKLSLEQMKEILETNGLDSSGSDIEVTRRCQDLLFFGALEKCLVCNGNLEFDGRRYACRGFYSEWSSCPFSTRDPPRKKEPIKLPDSVQNSPISDLLKKYQDPSQRPQRDLGLAIKPFTGMMISLMGRLNRTHQYWKTTIEKQGGKVTNSIIGATCLVASPAERARGGTSKLAEAMERDIPVVREAWLTDSIEKQEPQPLEAYDLVSDLSVAGKGIPWEKQDPGEEAIESLSADLKLYGKRGVYKDTKLQEQDGKIFDKDGILYNCAFSVCDQGRKLNDYCIMQLIVGPENRLHLYFKKGRVGDDPNAEERLEECENEGSAIKEFVRLFEELTGNEFESWEREKKFQKKPLKFYPIDMDDGVEVRHGALGLRQLGIAATHCKLEPMVAKFMKVLCSQEIYKYALMEMGYDSPDLPIGMVTNLHLQRCEEVLLEFIEKMKSLKETGPKADAIWSDFSQRWFTLMHSTRPFIFRDYQEIADHAAAALEGVRDITLASHLIGDMSGATIDDPLSATYKKLGCSVSALEKNSNDYEMIVKYLEKTYEPVKVGDIEYGVSVENIFAVEPSACPSYEDIVKLPNKVLLWCGSRSSNLLRHLHKGFLPAICSLPVPGYMFGKAIVCSDAAAEAARYGFTAVDRPEGFLVLAIASLGNEITELKSPPEDTTSLEENKIGVKGLGKKKTDESEHFVWKDDIKVPCGRIIASEHEDSPLEYNEYAVYDPKQVRICYLVGVKFEENGAVIDTAE 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02200 813 FunFam Poly [ADP-ribose] polymerase 445 587 - -
Vivi5g02200 813 Pfam PADR1 (NUC008) domain 98 148 IPR012982 GO:0008270
Vivi5g02200 813 SUPERFAMILY BRCT domain 180 286 IPR036420 -
Vivi5g02200 813 Gene3D - 34 107 - -
Vivi5g02200 813 SMART WGR_cls 334 417 IPR008893 -
Vivi5g02200 813 ProSiteProfiles PARP alpha-helical domain profile. 450 569 IPR004102 GO:0003950
Vivi5g02200 813 ProSiteProfiles WGR domain profile. 323 423 IPR008893 -
Vivi5g02200 813 SUPERFAMILY WGR domain-like 299 428 IPR036930 -
Vivi5g02200 813 Gene3D - 446 587 IPR036616 GO:0003950
Vivi5g02200 813 ProSiteProfiles Generated from MSF file: '/work/www/psmaker/tmp/pfmake.input.483415'. 40 180 IPR047572 GO:0008270
Vivi5g02200 813 CDD parp_like 450 801 - -
Vivi5g02200 813 Gene3D BRCT domain 183 281 IPR036420 -
Vivi5g02200 813 PANTHER DNA LIGASE 17 803 - -
Vivi5g02200 813 ProSiteProfiles BRCT domain profile. 183 275 IPR001357 -
Vivi5g02200 813 SMART PADR1_2 96 149 IPR012982 GO:0008270
Vivi5g02200 813 FunFam Poly [ADP-ribose] polymerase 588 804 - -
Vivi5g02200 813 Coils Coil 494 514 - -
Vivi5g02200 813 Pfam Poly(ADP-ribose) polymerase catalytic domain 598 802 IPR012317 GO:0003950
Vivi5g02200 813 Gene3D - 108 171 IPR038650 -
Vivi5g02200 813 SUPERFAMILY ADP-ribosylation 587 804 - -
Vivi5g02200 813 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 450 586 IPR036616 GO:0003950
Vivi5g02200 813 CDD BRCT_PARP1 188 263 - -
Vivi5g02200 813 Gene3D - 588 804 - -
Vivi5g02200 813 ProSiteProfiles PARP catalytic domain profile. 578 809 IPR012317 GO:0003950
Vivi5g02200 813 Pfam BRCA1 C Terminus (BRCT) domain 186 262 IPR001357 -
Vivi5g02200 813 MobiDBLite consensus disorder prediction 1 45 - -
Vivi5g02200 813 Pfam WGR domain 334 412 IPR008893 -
Vivi5g02200 813 CDD WGR_PARP1_like 324 430 - -
Vivi5g02200 813 SMART BRCT_7 185 265 IPR001357 -
Vivi5g02200 813 MobiDBLite consensus disorder prediction 139 160 - -
Vivi5g02200 813 Pfam Poly(ADP-ribose) polymerase, regulatory domain 451 584 IPR004102 GO:0003950
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02200 Vivi-Chr5 91104418 91108550 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02200 K10798 - gmx:548024 1446.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g02200 5 91104418 91108550 Vivi5g02200 5 91104418 91108550 ECH