LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi5g02167	ATGGCGGTAAGAGCCACAGTATCACGGTTTCCAATTGATGCGGACGCGCGCGAGGGTTCCGGCCTCCTATGGGGAGTAACCGTCGCACCATTCGCCGCCGCCGACGAAAACGGCCAATCTCCGGCATACGGATCCGGCGGCGACCTCTTACCCCGGTGCGAGAATTGCTGGGCTTACTTCAACACCTACTGTGAGCTTGAACAATGGTCATGGGCTTGCTCCCTCTGCGGAAACCTCAACGGCCTCTCTTCCAACGCGATCGAACGCTATTCTCGACCGCAATCGTGCGCCGAGATGATGTCCTCTTTCGTAGATCTCGAATTGCCTCAAGAAGAATCTGATGCTGCTGCATTGCAAGCATGTCCTGTTTATGTTGCTGCTGTTGACTTGTCGTCTTCAGAGGAATTTCTGGAACTCACTAAAAGTGCATTACTGGCAGCTTTGGAAGCGCTTGCTCCCGGTTCACTTTTTGGGCTTGCTACCTTCAGCCACAAACTAGGACTGTATGATGTTCAAGGTCCAATACCTGTTGTGAAAAATGTTTTCATCCCTCCTGATGCAGAGGGAACCTTAACAATTGAGCTTGAAGATGTCATGCCTTTGTTACAGTTTCTGGCTCCTGTGGATACCTGTAAGGACCGTATTGCATCCACACTTGAAACACTTAGGCCAACAACTTCATGGGAGAGAACCACAGGAGCAGGTCAAGGACTGGATGGTGTTCTGCTAGGTGGGCGTGGTTTTGGGGTGGCAATGGAAGCCCTCTGCAGTTACCTTGGATCTGAATATGGAAACACTTTTGCACTAGCTAGAATCTTTGCTTTCTTGTCTGGTCCTCCTGATTATGGAGCTGGACAATTGGACACGAGACGATATGGTGAGCAGTATGCAAGCAAAGGGGAGGACGCGGATCGTGCTTTACTCCCAGAGCAGACACCTTTTTATAAAGATCTGGCTGCTGTTGCTGTTCAAGTAGGTGTATGTGTTGACATATTTGCTGTAACAAATGAGTACACTGATTTGGCATCCCTAAAATTTTTGAGTATTGAAAGCGGGGGTTCCTTATTTTTTTATACAAGTACCGAAGATTCAACTTTGCCTCAGGATATGTATCGAATGCTGAGTAGGCCATATGCTTTTGGCTGTGTTCTGCGATTAAGAACCTCAACTGAATTTAAACCTGGAAATTCTTATGGTCACTTCTTTCCAGATCCACAGTATGAAAATGTTCAACATGTAATATGCTGTGATTCATATGCTACATATGCTTATGACTTTGTGTTTGAGAACAACATTGGGTTTTCAAGTAAATCAGATGTTCCTACACTCCAGATTGCATTCCAGTACTCAGTTGTAGTTCCTCCTCAGGAGCTTTCCAGTTCAGGAGGGGTATCTACAAGCAGAACAAAGCATCATTCTCTTCAACGCCGGCTAAGGATCCGAACAGTGCAGTTTGGCGTTGCTCAGGACATTCACGAACTTTACGACAGCTGTGATCCTGAAGTTGTTCTATCTTTGCTTGTGCATAAGGTTATACTCGCCTCTTTGGAGGAAGGAGTTCGGGAGGGTAGACTTTTGCTTCAAGAATGGCTAGTGATCCTTGCAGCTCAGTACAATGATGCTTATAAACTTGTTCAGTATAGTAATGGAAATTCAATAAGATCTCAGATTGATGTTGCCTTCTCTCAATGTCCTCAACTGCAGCCCCTACCACGCCTAATCTTTGCTCTCCTTCGAAACCCTCTTCTTCGCTTCCACGAAGAAGGTGTTCATCCTGACTATCGGATCTATCTTCAATGCCTGTTTAGTGCTTTGGAACCGAGTTCTCTTCATCGTGCTGTGTATCCAGTATTGACATCATATGCTACTCCAGACAAACAAGCATATCCTCGCCATTCCTTGAGTCGTGCTGCACTGCTTACCAGTGGCAGCCCAATATTTTTCCTGGATGCATTCACAGTTTTGATTGTGTTTTATTCCTCAACTGCAGACCCAACTCTTCCTTTTCCTCCACCCCATGACTGCTTGTTAAGGACTACAATCAACAAATTGAAGAAAGAAAGATCCATCACTCCTAAACTCATATTTATTCGAGGAGGGCATGACGATGCCTCAGTTTTTGAGAACTTTCTGATCGAGGAGCAGGATGTTGATGGAAGTGGTCTTACAAGTGTGATGGGTTTTGTTTCCTTCCTTGAAGATATAACTCAGAAAGTTTTAGAATTCATAAAATAG	2235	0.4537	MAVRATVSRFPIDADAREGSGLLWGVTVAPFAAADENGQSPAYGSGGDLLPRCENCWAYFNTYCELEQWSWACSLCGNLNGLSSNAIERYSRPQSCAEMMSSFVDLELPQEESDAAALQACPVYVAAVDLSSSEEFLELTKSALLAALEALAPGSLFGLATFSHKLGLYDVQGPIPVVKNVFIPPDAEGTLTIELEDVMPLLQFLAPVDTCKDRIASTLETLRPTTSWERTTGAGQGLDGVLLGGRGFGVAMEALCSYLGSEYGNTFALARIFAFLSGPPDYGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQVGVCVDIFAVTNEYTDLASLKFLSIESGGSLFFYTSTEDSTLPQDMYRMLSRPYAFGCVLRLRTSTEFKPGNSYGHFFPDPQYENVQHVICCDSYATYAYDFVFENNIGFSSKSDVPTLQIAFQYSVVVPPQELSSSGGVSTSRTKHHSLQRRLRIRTVQFGVAQDIHELYDSCDPEVVLSLLVHKVILASLEEGVREGRLLLQEWLVILAAQYNDAYKLVQYSNGNSIRSQIDVAFSQCPQLQPLPRLIFALLRNPLLRFHEEGVHPDYRIYLQCLFSALEPSSLHRAVYPVLTSYATPDKQAYPRHSLSRAALLTSGSPIFFLDAFTVLIVFYSSTADPTLPFPPPHDCLLRTTINKLKKERSITPKLIFIRGGHDDASVFENFLIEEQDVDGSGLTSVMGFVSFLEDITQKVLEFIK	744

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi5g02167	744	Gene3D	-	31	104	-	-
	Vivi5g02167	744	Gene3D	von Willebrand factor, type A domain	121	378	IPR036465	-
	Vivi5g02167	744	PANTHER	SEC24-RELATED PROTEIN	3	737	-	-
	Vivi5g02167	744	SUPERFAMILY	vWA-like	122	376	IPR036465	-
	Vivi5g02167	744	SUPERFAMILY	beta-sandwich domain of Sec23/24	3	498	-	-
	Vivi5g02167	744	SUPERFAMILY	Zn-finger domain of Sec23/24	45	111	IPR036174	GO:0006886\|GO:0006888\|GO:0008270\|GO:0030127
	Vivi5g02167	744	SUPERFAMILY	Helical domain of Sec23/24	499	615	IPR036175	GO:0006886\|GO:0006888\|GO:0030127
	Vivi5g02167	744	Gene3D	Sec23/Sec24 helical domain	471	628	-	-
	Vivi5g02167	744	Pfam	Sec23/Sec24 helical domain	499	611	IPR006900	GO:0006886\|GO:0006888\|GO:0030127
	Vivi5g02167	744	Pfam	Sec23/Sec24 trunk domain	121	373	IPR006896	GO:0006886\|GO:0006888\|GO:0030127

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi5g02167	Vivi-Chr5	89972222	89979438	Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi5g02167	-		-	tpra:123882472	1390.94

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vivi5g02167	5	89972222	89979438	Vivi5g02167	5	89972222	89979438	ECH