Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02132 ATGACAACCGTTCCTTTGGCCTCCGCTGTTCTACGAAGGCTTGAAGGCAAGGTGGCTCTGATCACCGGTGGAGCGGGCGGCATCGGCGAAGCCACCGCAAGACTCTTCGCCAACCATGGAGCTAAAGTCGTTATAGCTGACATTGAAGACGACAAAGGTAACTCACTTTGCCAAGAGTTACACAAATCATCAGCTTCTTATGTTCACTGCGACGTGACAAAGGAAAAAGACATAGAAACTGCCGTGAACACAACGGTTTCCAAGTACGGCAAACTCGACATCATGTTAAACAACGCTGGCATAGCCGGTGTAAACAATACCAACATACTTGACTTCAAATTATCTGAATTTCAACAAGTGATCAACATTAACTTGGTTGGTGTCTTTCTCGGAACAAAACACGCTTCAAGAGTAATGATCCCTGCTCGACGAGGTTGCATAATTAACACAGCTAGTATTTGTGGAAGCATAGGTGGTGTGGCGAATCATGCCTACACGAGTTCAAAGCACGCTGTTGTGGGGCTGACGAGAAACACGGCGGTCGAGCTTGGACCGTTCGGTGTTCGGGTGAATTGTGTGTCGCCTTATATTGTTCTCACTCCGATGGCTACGAAATACTTAAAAGTAGATGATGATGGGATTCTAGGGGTTTATTCTAACCTAAAGGGTACTAATCTTTTGCCAAATGATGTGGCTGAAGCTAATCTGTACTTGGGAAGTGATGAATCTAAGTATGTTAGTGGTCACAATCTTATCGTTGATGGAGGATTTACAGTTGTGAACAATGGATTTTGTTCTTTTGCACAATCTGTGTGA 816 0.4473 MTTVPLASAVLRRLEGKVALITGGAGGIGEATARLFANHGAKVVIADIEDDKGNSLCQELHKSSASYVHCDVTKEKDIETAVNTTVSKYGKLDIMLNNAGIAGVNNTNILDFKLSEFQQVININLVGVFLGTKHASRVMIPARRGCIINTASICGSIGGVANHAYTSSKHAVVGLTRNTAVELGPFGVRVNCVSPYIVLTPMATKYLKVDDDGILGVYSNLKGTNLLPNDVAEANLYLGSDESKYVSGHNLIVDGGFTVVNNGFCSFAQSV 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02132 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 90 101 IPR002347 -
Vivi5g02132 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 184 IPR002347 -
Vivi5g02132 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 153 IPR002347 -
Vivi5g02132 271 Pfam Enoyl-(Acyl carrier protein) reductase 23 258 - -
Vivi5g02132 271 CDD secoisolariciresinol-DH_like_SDR_c 13 258 IPR045309 GO:0016616
Vivi5g02132 271 Gene3D - 7 269 - -
Vivi5g02132 271 PRINTS Glucose/ribitol dehydrogenase family signature 139 155 IPR002347 -
Vivi5g02132 271 PRINTS Glucose/ribitol dehydrogenase family signature 221 241 IPR002347 -
Vivi5g02132 271 PRINTS Glucose/ribitol dehydrogenase family signature 90 101 IPR002347 -
Vivi5g02132 271 PRINTS Glucose/ribitol dehydrogenase family signature 165 184 IPR002347 -
Vivi5g02132 271 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Vivi5g02132 271 PRINTS Glucose/ribitol dehydrogenase family signature 186 203 IPR002347 -
Vivi5g02132 271 FunFam Short-chain dehydrogenase reductase 3 262 - -
Vivi5g02132 271 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 152 180 IPR020904 GO:0016491
Vivi5g02132 271 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 260 IPR036291 -
Vivi5g02132 271 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 12 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02132 Vivi-Chr5 88353283 88354559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02132 14 259 Acyl Lipid Metabolism Gene Families AT1G63380 33.846 4.85e-31 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02132 - - gmx:100782627 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g02132 5 88353283 88354559 Vivi5g02132 5 88353283 88354559 ECH