Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02122 ATGGGTGTACCAGTGTTTTATAGATGGTTAATAAAAAAATATCCAAAGATTATTGAAGATGCTAACACCAACACTACTCCAACGGTGGAATATGATAATCTTTATATCGACATGAACTCCATTATCCATCCATGTTTTCATCCCAACGATGATAACATCAATACTTCACCTCCAACAACATTTTTGGAAGTGTTTGCAAATATGTTTGACTACATTGATCACCTTGTTACCATTGTTAAACCTAGAAAGCTACTGTACATGGCCATCGATGGAGTTGCACCACGAGGCAAAATGAACCAGCAAAGGACCAGACGTTTTCAAGCTGCTAAAGATAATGAAATGCGTGAAGCTGAGGAAGAGAGACTGAGGAAACAATATGAAATGGAAGGAAAACAAGTTCTACCCAAACAAGAATGTGAAGTGTCTGATTCTAATATAATCACACCAGGGACTGAGTTCATGCATCAACTCTCAAAGGCTCTTAAAGCTTACATCTCTTCAAGGATTTCTTCTGATTTATTATGGAAGGATATTATGGTAATTTTATCTGATTCTAATGTTCCTGGAGAAGGAGAACATAAGATTATGTCATTCATAAGGAAACAGCGCGGACTGCCTGATTACAATCCAAACACTGTCCATTGCCTATATGGCTCGGATGCTGATCTCATAATGCTTGGATTGTCAAGCCATGAGCCTCATTTTTCAATTTTAAGAGAGGTTATCAAGGATCCTCCTAATTATTATGAGAAGCTGGAGCAAAATGCTGCAAAGACGTTCAAGCTTTTGCATATTTGGTTGTTGAGAGAATATCTTGAATTAGACATGAAGATCCAAGATCCTCCCAAAAATTTCATTTATGATTTTGAGCGGATAATTGACGATTTTATCTTCATTTGTTTCTTCGCTGGAAATGATTTTCTTCCCCAATTGCCTTCTTTGGATATTTATGATGGGTCTATTGATTTACTTATGACTGTTTACAAGAAGGAGTTTCATAAACTTGGAGGATATCTTGTCGACATAAATAAGATGGGTGGGAAACATAGTGATTTTGTGAAGCTATCAAGAGTTGAAGAATTCATACTCATGGTTGGTACATATGAAGAAAAAATCTTCAATAAAATAAGTGCAATGAGAGAGAAAAAATTAAGAAGGCTTATTAGGGATCATGAAAATTCAAAGCAAGAAGAACAGGATGCATGTAATTTCACTAATATTGAGAATGGAAGTAGTTCAGATTGCGCTATTCGCATTAAGAAGACGCCGACTTCCTACAATGTTTGTCCAGTGTCTCATGAAGAAATTTTGAAGAACACATATGATTTAAAAGAGGAGTTAAAGAAATGCATGAAAGGTAAAGGGGATTTATTTACGAGTGGAGATTTCTTGAATGACAAGATAAAACTAGGAGCTGTTGGCTTTAAAGAAAGATATTATAAAGAGAAATTTTCTGTGGACGGTTCCATCAACATTGAGCAAAAAAGAAAACAAGTAGTGCAGAAGTACACTGAAGGATTATTGTGGCTTCTTGAGTACTATTTTTCAGGAGTTGCTTCATGGACATGGTTTTATCCATTCTACTATAGTCCATTTGCTTCAGACTTTAAGGGTATGAGTCAAGTGAGAGTAAATTTTGAGAAAGGTGTTCCATTCTTGCCTTTTGATCAACTCTTAAGTGTTCTTCCTCAAAGGAGTGCTTATGCCCTTCCTAAAGCTTATGCACAATTGATGCTGGATGAGAAGTCTAAAATATTTGACTTGTTTCCTCGGCAATTTGAAGTTGACATAGAAGGAAAGCGCTTCAGGTGGATGGGCGTATTCAAACTTCCATATATCGATGAAAGAAGGCTTTTGGCTGAAACCAGAGAACTCATAAAGGGATTATCTGAAAATGAAGCAATGAGAAATTCGGTTGAAGTTGATAGGTTGTTGGTTAGCAAGAGTCTTAAGTTGGCAGAAAAAATTTGCTCACTAAGTTCAAACAAGCTACATACAAGCATAAGCATTGATGGCATTGGAGGCACCATAAGTCTCTGTCACAACTGTGTTGAGGACAACAATGAAGAAGATGTTGTCTTCTGTGTCAAATACGAGCTACCTATGAATAGTACAAGTCGTTATCAGCATTTGCTATTTGGTGTAAACCTTCCTGATAAGACAATATTTGAAAATGACTTAATGGAAACAGTTCTTTGGCACGAACGTCAGCAACAATATAATCGCTTTGAAAGGTTACATAATCAAGACCGTTGGAGAAGTTCAAACAATGAGGCCAGTACTTCAAAGTTTCCACCAAATAAAACTACTTTTGGTGGAAGAAGCTCTTCTCTAAATGCATCACCTGAATTCATCCACAAAGGTGCTGGTGTTGGATGGGCTTCAGGTAGAGGAAAACCAGAAAGAATAAATCATGAAACTCTAAATGATAGAATGTCATCATTTTCTCCTTTTCACAATCAACAATCTACCGATCATGGAGAATCTTACTATTGTCATCCATGTTCGAATAATGTGCCTTATGGTCGAGGACGAGGTAGGGCTCAAAAAAATTCCAATAATGTGTATTCATGA 2574 0.366 MGVPVFYRWLIKKYPKIIEDANTNTTPTVEYDNLYIDMNSIIHPCFHPNDDNINTSPPTTFLEVFANMFDYIDHLVTIVKPRKLLYMAIDGVAPRGKMNQQRTRRFQAAKDNEMREAEEERLRKQYEMEGKQVLPKQECEVSDSNIITPGTEFMHQLSKALKAYISSRISSDLLWKDIMVILSDSNVPGEGEHKIMSFIRKQRGLPDYNPNTVHCLYGSDADLIMLGLSSHEPHFSILREVIKDPPNYYEKLEQNAAKTFKLLHIWLLREYLELDMKIQDPPKNFIYDFERIIDDFIFICFFAGNDFLPQLPSLDIYDGSIDLLMTVYKKEFHKLGGYLVDINKMGGKHSDFVKLSRVEEFILMVGTYEEKIFNKISAMREKKLRRLIRDHENSKQEEQDACNFTNIENGSSSDCAIRIKKTPTSYNVCPVSHEEILKNTYDLKEELKKCMKGKGDLFTSGDFLNDKIKLGAVGFKERYYKEKFSVDGSINIEQKRKQVVQKYTEGLLWLLEYYFSGVASWTWFYPFYYSPFASDFKGMSQVRVNFEKGVPFLPFDQLLSVLPQRSAYALPKAYAQLMLDEKSKIFDLFPRQFEVDIEGKRFRWMGVFKLPYIDERRLLAETRELIKGLSENEAMRNSVEVDRLLVSKSLKLAEKICSLSSNKLHTSISIDGIGGTISLCHNCVEDNNEEDVVFCVKYELPMNSTSRYQHLLFGVNLPDKTIFENDLMETVLWHERQQQYNRFERLHNQDRWRSSNNEASTSKFPPNKTTFGGRSSSLNASPEFIHKGAGVGWASGRGKPERINHETLNDRMSSFSPFHNQQSTDHGESYYCHPCSNNVPYGRGRGRAQKNSNNVYS 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02122 857 Pfam XRN 5'-3' exonuclease N-terminus 1 240 IPR004859 GO:0003676|GO:0004527
Vivi5g02122 857 Gene3D - 536 639 - -
Vivi5g02122 857 Gene3D - 141 330 - -
Vivi5g02122 857 Gene3D - 1 134 - -
Vivi5g02122 857 PANTHER 5'->3' EXORIBONUCLEASE 1 822 IPR027073 -
Vivi5g02122 857 Coils Coil 381 401 - -
Vivi5g02122 857 MobiDBLite consensus disorder prediction 753 779 - -
Vivi5g02122 857 Pfam Xrn1 helical domain 287 727 IPR041412 -
Vivi5g02122 857 MobiDBLite consensus disorder prediction 751 779 - -
Vivi5g02122 857 CDD PIN_XRN1-2-like 34 272 - -
Vivi5g02122 857 PIRSF Exonuclease_Xrn2 244 857 IPR017151 GO:0004534|GO:0005634|GO:0006139
Vivi5g02122 857 PIRSF Exonuclease_Xrn2 1 252 IPR017151 GO:0004534|GO:0005634|GO:0006139
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02122 Vivi-Chr5 87285395 87295898 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02122 - - tpra:123924370 1294.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g02122 5 87285395 87295898 Vivi5g02122 5 87285395 87295898 ECH