Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01943 ATGATTCCATGGGAATTCTTCGGCCAGTTTTTGCTAACCCTTCAATTTGTAAAGTATGTGTTCCATGGCGCCGACAATGATGTTCTCTGGCTACAGAGGGACTTTCACATATACATTGTTAATCTGTTTGATACTTCAAAGGCATGCGAGGTGCTATCGAAACCACAAAAATCACTTGCGTATTTGCTAGAAACTTACTGTGGTGTGACAACAAATAAATTATTACAGCGTGAAGACTGGAGACAACGCCCTCTCTCAGAAGAAATGGTACATTATGCACGAACAGATGCTCACTATCTGTTGTATATTGCAAACTGTCTGATTGCTGAACTGAAACAACTGGACAATGATAACTCTTGTTCCGATGACAAATTCCATTTTGTTCTTGAGGCTAGTCGGCGTTCAAACATGACTTGTTTACAACTTTTCACAAAGGAGGTTGAAGCTTCGCCCGGAGAATCTGCTGCATTATCATTATTTTCACGTCATCAGAGCAATCAAGGCTTTCCTTCAATTTCCAATGAAACCCAGTTTCTGTATACCGTGAGGCAGCTGTGCACATGGAGAGATTTGATGGCTCGTATTCATGACGAAAGCATAAAATATGTACTGTCAGACCAGGCAATTGTTGCTTTGGCAAGTCAGCTTCCAACAAGCCACTCTGAAATATATAACACCATAGTTCAGACTGATGTCAATGCAGAAACGGGTCTGAGCTCTTGCAATCCTTCCCCATCTCCTGTTGTTTGCAGCCACCTGAGTGATATCTCTCATCTGCTTGCAAATGAGTTGGTTAACCATGGTGATATTTATTCTGTGAATCTTCAGAAGTGTCTAGGTCAAAATGGAAGTTGTAAACTTAACATATTTAATTATGCTTTGTTGGTTAATAGTAACCCAAGACCAACCTTACTATTCTATAAGCACTCGAGCCTAAAAAATCCTAGACAACATTCAAAGAAGGATTCTCGAAATTCATTCGTTAAAAAATTCTCTTGCAAATCTCCTGTTTATCACAATTGTCGGATATTTGCTAATGATGGGAGGCTGCTTTGTTACTGTGATCGGAAGAAGCTTGAATGGTACCTTAACCGGGATCTTGCAAAGTTTGTCGAGGAGGATCCCCCAGGTATAATGCTTCTTTTTGAACCCAAAGGCCGCCCAGAGGATGAAGGCAATGATTTTTATATCCAGAGTAAGAAAAATATATGTGTTGGGTGTGGTGAAGGAAGTCACTACTTACGATATCGAATAATCCCATCATGTTATAGAATACATTTCCCTGAACATTTGAAGAGTCATCGCTCTCATGATATTGTCCTACTTTGTGTGGATTGCCATGAAGTTGCCCATGCTGCTGCAGAGAAGTATAAAAGAAAAATAGCTTCTGAATTTGGGATTCCTCTGTATGTTCGGAGGGTAATTCATCCAGGGAAAGAGACTGAAAAATCTAATGATGAGGGAGGTGTATCTCCATTACAATTACGATCTGCTGCTGTGGCTCTTCTACGTCACGGGCCAAGAATGCCTCTTGAGCGACGTGAAGAACTGACCGAGATTGTAAAGAAATATTATGGAGGAAGGGAGATATCTGAAGAGGATCTAGAGAGTGCTTTGCAAGTTGGAATGCGTCCTTATGAGAGAAGAAGATATGAGAAGAAGAGAGGGGTATCATTTAAACATTCCACAGGAAATGCTGTTGCAGTGCCACAAGGGGAAAATCATGCTGGTTACGCACCTGAAATTGTTAGTAATGTGGGGACATTGAATATTGATACTCTTGATGGTTCGTATGCAAATGAAGAAACAGTAAGCGGAAATAATAGAGAAGATGATATTGGAAAACCCTCTTTGACTTCTGATCTTGCTGTTGATAAAGCTACTTCAAATGGAAATACCATTTTAGTTAAAACTACAAATGACGACAATGATGATAATGATAATGATGATGATGTTGAAACAAGTAACTCTGCTGTAAATGTTGATGAGAGTCTGAACAAAAGCCAACCAATTGTTGTTAGCGACTTATCTTATTCCAAAGACGAAGAATCACCTAGAGATGAAGATTCAACACAAGCAAAACATCATTCAAAACTATCGCTCTTGGGACATGGTCCACACGGTAAACACGTTGTAGATCATTTATTGAAGGAGTATGGTGAAGATGGCATTCGAGAGTTTTGTCAAAGATGGAGACAAGTATTTGTGGATACTTTAAAACCGCGTTTTCTTCCTGGTGGATGGGACATAAAACACAGTGGAAAGAGGGATTTCGGCGAGTTCAGTGTATACAAAGGAGCTGCTGCTGCTTCTAGTTTGGAGTGA 2325 0.4 MIPWEFFGQFLLTLQFVKYVFHGADNDVLWLQRDFHIYIVNLFDTSKACEVLSKPQKSLAYLLETYCGVTTNKLLQREDWRQRPLSEEMVHYARTDAHYLLYIANCLIAELKQLDNDNSCSDDKFHFVLEASRRSNMTCLQLFTKEVEASPGESAALSLFSRHQSNQGFPSISNETQFLYTVRQLCTWRDLMARIHDESIKYVLSDQAIVALASQLPTSHSEIYNTIVQTDVNAETGLSSCNPSPSPVVCSHLSDISHLLANELVNHGDIYSVNLQKCLGQNGSCKLNIFNYALLVNSNPRPTLLFYKHSSLKNPRQHSKKDSRNSFVKKFSCKSPVYHNCRIFANDGRLLCYCDRKKLEWYLNRDLAKFVEEDPPGIMLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGSHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEVAHAAAEKYKRKIASEFGIPLYVRRVIHPGKETEKSNDEGGVSPLQLRSAAVALLRHGPRMPLERREELTEIVKKYYGGREISEEDLESALQVGMRPYERRRYEKKRGVSFKHSTGNAVAVPQGENHAGYAPEIVSNVGTLNIDTLDGSYANEETVSGNNREDDIGKPSLTSDLAVDKATSNGNTILVKTTNDDNDDNDNDDDVETSNSAVNVDESLNKSQPIVVSDLSYSKDEESPRDEDSTQAKHHSKLSLLGHGPHGKHVVDHLLKEYGEDGIREFCQRWRQVFVDTLKPRFLPGGWDIKHSGKRDFGEFSVYKGAAAASSLE 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01943 774 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 20 769 IPR045092 GO:0000175|GO:0000467
Vivi5g01943 774 Gene3D - 9 149 IPR036397 GO:0003676
Vivi5g01943 774 Pfam 3'-5' exonuclease 17 111 IPR002562 GO:0003676|GO:0006139|GO:0008408
Vivi5g01943 774 MobiDBLite consensus disorder prediction 653 675 - -
Vivi5g01943 774 Gene3D HRDC domain 169 269 IPR044876 -
Vivi5g01943 774 MobiDBLite consensus disorder prediction 600 705 - -
Vivi5g01943 774 MobiDBLite consensus disorder prediction 679 695 - -
Vivi5g01943 774 SUPERFAMILY HRDC-like 176 229 IPR010997 GO:0000166|GO:0044237
Vivi5g01943 774 Pfam HRDC domain 182 223 IPR002121 GO:0003676
Vivi5g01943 774 SUPERFAMILY Ribonuclease H-like 18 116 IPR012337 -
Vivi5g01943 774 ProSiteProfiles HRDC domain profile. 175 259 IPR002121 GO:0003676
Vivi5g01943 774 MobiDBLite consensus disorder prediction 622 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01943 Vivi-Chr5 74440442 74445777 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01943 K12951 - gmx:100791485 1112.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g01943 5 74440442 74445777 Vivi5g01943 5 74440442 74445777 ECH