Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01940 ATGGCAGAACCCAAAGTTAAATACGATCGCCAACTCAGAATATGGGGTGACCAGGGACAGGCAGCCCTTGAGAAATCTAATATTTGCTTGCTTAACTGTGGTCCTACTGGTTCCGAGACACTTAAGAATCTTGTTCTAGGTGGGATTGGAAGCATCACTGTGGTTGATGGATCTAAAGTTGAAGTTGGTGACCTTGGAAACAATTTTTTGGTGGATGAATCAAGCCTTGGGCAGTCGAAGGCAAAGTATGTGTGCTCATTTCTCCAGGAGCTGAATGATGCAGTTAAAGCAAAATATGTAGAAGAGTATCCAGATGCATTGATTGAGACAAATCCATCATTCTTTTCTCAATTTACTTTGGTTGTTGCCACACAGCTGGTGGAAAGTTCAATGGTGAAGCTTGACCGAATCTGCAGAAATGCAAATGTTATATTGATACTTGCCCGCTCCTATGGCCTTACTGGGTTTGTACGAATCAGCTTGAAGGAACATACTGTGATTGAATCAAAGCCCGAGCATTTTCTGGATGATCTTCGGTTAAATAATCCTTGGCCTGAACTCAAAAGGTTTGCAGAGGGGTTTGACTTGAACGTGCAAGACCCTGTTGTTCATAAACATATACCCTATGTTGTCATTCTTGTCAAGATGGCTGATGAGTGGGCCAAAAGCCATGGTGGTAGGCTTCCATCAACTAGAGAAGAAAAAAAGGAGTTCAAGGAGCTTCTTAAGGCTGGGATGGTCGCGCAAGATGAAGATAATTATAAAGAAGCTATTGAGTCCTCATTCAAAGTATTTGCCCCCCGAGGAATTAGTTCAGAGTTGCAACAAATGCTAAATGATAGTTCTGCGGAAGTAGATTCCAGTTCGTCTGATTTTTGGGTGTTGGTGGCAGCTCTAAAGGATTTTGTTACAAATGAAGGTGGTGGGGAGGCACCTCTTGAAGGATCTATACCAGATATGACTTCTTCCACTGAACAATATGTGAATTTACAGAATATATATCAGGCTAAGGCTGAGGCTGACATTCTTGCAATAGAGCGAGTGGCGAGAAATACTTTGAAGAAAGTTGGTAGAGATCCAAATAGCATACCAAGGGCAACAATTAAAAGCTTCTGTAAAAATTCGAGAAAACTCAAAGTTTGCAGATATCGTCTGATTGAAGATGAGTTTAATTCTCCAAACCTACCGGAGTTACAGAAGTACCTGACTGACGAGGATTACAGCATCGCTGTGGGAATTTATATTTTGCTTCGGGCTGTTGACCGGTTTGCTGCTAACTACAACAGTTTTCCTGGACAGTTTGACAATGCAATGGACGAGGATATATCTCGATTAAAGAGCACAGCAGTTGGCCTGCTTAATGACTTGGGATGCAATAGTGCTACTTTAGCTGAGGACCTTATCAATGAGATGTGTCGATTTGGTGCTGCAGAGCTTCATGCTGTTGCTGCTTTGGTTGGAGGAATTGCATCACAAGAAGCGATCAAGCTCATAACAAGACAATTTGTACCAATATCTGGGACCTACATATTCAACGGCATTGATCACAAGTCACAGCTATTGTTATTGTAA 1572 0.4192 MAEPKVKYDRQLRIWGDQGQAALEKSNICLLNCGPTGSETLKNLVLGGIGSITVVDGSKVEVGDLGNNFLVDESSLGQSKAKYVCSFLQELNDAVKAKYVEEYPDALIETNPSFFSQFTLVVATQLVESSMVKLDRICRNANVILILARSYGLTGFVRISLKEHTVIESKPEHFLDDLRLNNPWPELKRFAEGFDLNVQDPVVHKHIPYVVILVKMADEWAKSHGGRLPSTREEKKEFKELLKAGMVAQDEDNYKEAIESSFKVFAPRGISSELQQMLNDSSAEVDSSSSDFWVLVAALKDFVTNEGGGEAPLEGSIPDMTSSTEQYVNLQNIYQAKAEADILAIERVARNTLKKVGRDPNSIPRATIKSFCKNSRKLKVCRYRLIEDEFNSPNLPELQKYLTDEDYSIAVGIYILLRAVDRFAANYNSFPGQFDNAMDEDISRLKSTAVGLLNDLGCNSATLAEDLINEMCRFGAAELHAVAALVGGIASQEAIKLITRQFVPISGTYIFNGIDHKSQLLLL 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01940 523 CDD APPBP1_RUB 7 521 - -
Vivi5g01940 523 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 2 502 IPR045886 -
Vivi5g01940 523 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 7 519 IPR035985 GO:0008641
Vivi5g01940 523 FunFam NEDD8-activating enzyme E1 regulatory subunit 1 274 - -
Vivi5g01940 523 Gene3D - 360 523 - -
Vivi5g01940 523 Gene3D - 2 272 - -
Vivi5g01940 523 FunFam NEDD8-activating enzyme E1 regulatory subunit 361 523 - -
Vivi5g01940 523 PIRSF APP-BP1 1 523 IPR030667 GO:0019781|GO:0045116
Vivi5g01940 523 Pfam ThiF family 8 501 IPR000594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01940 Vivi-Chr5 74415188 74429869 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01940 7 78 EF-hand Containing Proteins AT2G30110 33.766 1.91e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01940 K04532 - gmx:100793799 935.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g01940 5 74415188 74429869 Vivi5g01940 5 74415188 74429869 ECH