Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01939 ATGTATACATCAACACCTCCTCTTCCCAGACCAACCAATCCTAACAAACTCTTTTCTAGAACCTTCTCCGCTTCTCCTCCTTCTCTTACTGCTCGCACTTCTCGATCATTCTTTTGTTCCTTTTCTCGCCTCAACCGCCGTCTCCATTGTAATTCTCCTCTCACTCTTCGTCCTCAGATCAGAGCCGTCGCTCCCGCCGTAGAAAGTTTCCACCGCAAAATCGCTACCACAGCCACTGAAAATCCCTTCAAGGGAAACTTGGCAAGTCTTCCTAAGCCGGGTGGTGGCGAGTTTGGAAAATTCTATAGTCTTCCTTCACTCAATGATCCAAGAATTGACAGGTTACCATACTCGATTAGAATTCTCCTTGAATCCGCCATTCGCAATTGCGATAACTTCCAAGTCACTAAAGAAGATGTTGAAAAGATTATTGATTGGGAAAACACATCTACTAAGCAAGTTGAGATTCCTTTCAAGCCTGCACGTGTTCTCTTGCAGGATTTTACTGGAGTGCCAGCTGTTGTCGATTTGGCGTGTATGCGAGACGCTATGAATAAGCTTGGCAGTGATTCAAACAAAATCAATCCTCTGGTTCCTGTTGATCTCGTCGTTGACCATTCAGTTCAAGTTGATGTGGCAAGGTCAGAAAATGCAGTGCAGGCTAATATGGAACTTGAATTCCAGAGAAACAAGGAGAGATTTGCTTTTCTTAAATGGGGATCAACAGCATTCCGTAACATGCTCGTTGTTCCTCCTGGTTCAGGTATCGTGCATCAGGTCAATCTTGAATATCTTGGACGAGTAGTTTTCAACAATGAGGGCTTACTCTATCCTGATAGTGTGGTTGGGACTGATTCACATACAACTATGATAGATGGGCTTGGTGTTGCTGGATGGGGTGTTGGAGGTATTGAAGCTGAGGCAGCAATGCTCGGTCAGCCAATGAGCATGGTTTTGCCTGGAGTTGTTGGATTCAAGCTAACTGGAAAACTGAGCAATGGTGTTACAGCAACTGATTTGGTTCTAACTGTGACACAAATTCTTAGAAAGCATGGTGTTGTAGGGAAGTTTGTTGAATTTTATGGTGATGGTATGAGTAAATTATCTTTAGCTGACAGAGCAACTATTGCTAACATGTCTCCTGAATATGGTGCCACCATGGGCTTCTTCCCTGTGGATCACGTTACATTACAATATCTCAAGCTGACCGGGAGAAGTGATGAGACTGTAGCGATGATAGAGTCTTATCTCAGGGCAAACAGACTGTTTGTTGACTATAATGAGCCACAACAAGATAGGGTATATTCATCATATCTTGAATTAAACCTGTCCGACGTAGAACCATGTATCTCAGGACCAAAGAGACCCCATGACCGTGTTCCTTTGAAAGAAATGAAAGCCGACTGGCATGCATGTCTTGATAACAAAGTTGGATTTAAGGGATTTGCTATACCAAAAGAGGCACAGGGAAAAGTTGTGAAATTTGACTTTCATGGGCAGCCAGCAGAGCTCAAGCATGGTAGTGTAGTGATTGCTGCAATCACAAGCTGTACAAATACATCAAACCCAAGTGTTATGCTTGGGGCTGGCCTTGTTGCAAAAAAGGCTCATGAGCTCGGTTTGCAGGTCAAGCCTTGGGTTAAAACAAGTCTTGCTCCAGGCTCTGGAGTTGCTACTAAATATCTACTCCAGAGTGGACTGCAAAAGTATCTGAATGAACAAGGTTTTCATATTGTTGGATTTGGCTGTACAACGTGCATTGGCAATTCAGGGGATCTGAATGAATCTGTTGCTTCTGCCATCTCAGATAATGACATTGTAGCAGCTGCTGTGTTGTCTGGGAACCGTAATTTTGAGGGTCGAGTCCATCCCTTGACAAGAGCTAATTATCTGGCCTCACCTCCTCTGGTTGTTGCTTATGCTCTTGCTGGCACGGTTGACATTGATTTTGAGAAGGAGCCAATTGGGACGGGGAAGGATGGCAAGAATGTCTACCTGAGGGATATTTGGCCATCTACTGAAGAAATTGCAGAGACTGTTCAATCTAGTGTGTTACCTGACATGTTCAGGAGTACATATGAGTCTATCACAAAGGGCAACCCTATGTGGAACCAACTACAAGTTCCAGCTGATACTCTCTACTCTTGGGACTCCGACTCGACATATATTCATGAGCCTCCATACTTCAAGAACATGACCATGGATCCTCCCGGATCTCATGGTGTGAAAGATGCCTATTGCCTGCTAAACTTTGGTGACAGTATAACCACTGATCATATTTCTCCAGCTGGAAGCATTAACAAGGACAGTCCTGCTGCCAAATACCTCCTAGAGCGTGGGGTTGAACGCAAAGACTTTAATTCTTATGGAAGCCGTCGTGGCAATGATGAGGTGATGGCGAGAGGAACCTTTGCCAACATTCGCCTTGTTAACAAGCTCTTAAACGGGGAAGTTGGCCCTAGAACAGTTCACATTCCAACTGGGGAGAAGCTTTTTGTGTACGATGCAGCTATGAGATACAAGGCTTCAGGACAAGACACCATTGTTCTAGCTGGAGCTGAATATGGCAGTGGAAGTTCTAGAGATTGGGCGGCCAAAGGTCCAATGTTATTGGGAGTCAAAGCTGTGATAGCTAAAAGTTTTGAGAGAATTCATCGCAGTAACTTGGTAGGAATGGGTATCATTCCTCTTTGCTACAAACCCGGGGAGGATGCAGACACATTGGGATTGACTGGTCATGAATGTTATACAATTGACCTTCCAAGTAAAATCAGTGAGATCAAGCCTGGCCAAGATGTCAAAGTCACAACTGATAGTGGGAAATCTTTCACCTGCATTGCACGCTTTGACACCGAGGTGGAACTTGCATACTTCAACCACGGAGGAATTCTTCCATATGTCATACGTAACCTCATTAAACAGTGA 2925 0.4434 MYTSTPPLPRPTNPNKLFSRTFSASPPSLTARTSRSFFCSFSRLNRRLHCNSPLTLRPQIRAVAPAVESFHRKIATTATENPFKGNLASLPKPGGGEFGKFYSLPSLNDPRIDRLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWENTSTKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVVDHSVQVDVARSENAVQANMELEFQRNKERFAFLKWGSTAFRNMLVVPPGSGIVHQVNLEYLGRVVFNNEGLLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLSNGVTATDLVLTVTQILRKHGVVGKFVEFYGDGMSKLSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMIESYLRANRLFVDYNEPQQDRVYSSYLELNLSDVEPCISGPKRPHDRVPLKEMKADWHACLDNKVGFKGFAIPKEAQGKVVKFDFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKAHELGLQVKPWVKTSLAPGSGVATKYLLQSGLQKYLNEQGFHIVGFGCTTCIGNSGDLNESVASAISDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKNVYLRDIWPSTEEIAETVQSSVLPDMFRSTYESITKGNPMWNQLQVPADTLYSWDSDSTYIHEPPYFKNMTMDPPGSHGVKDAYCLLNFGDSITTDHISPAGSINKDSPAAKYLLERGVERKDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPRTVHIPTGEKLFVYDAAMRYKASGQDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCYKPGEDADTLGLTGHECYTIDLPSKISEIKPGQDVKVTTDSGKSFTCIARFDTEVELAYFNHGGILPYVIRNLIKQ 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01939 974 Gene3D Aconitase, domain 3 80 448 IPR015931 -
Vivi5g01939 974 MobiDBLite consensus disorder prediction 14 31 - -
Vivi5g01939 974 Pfam Aconitase family (aconitate hydratase) 141 644 IPR001030 -
Vivi5g01939 974 ProSitePatterns Aconitase family signature 2. 575 588 IPR018136 -
Vivi5g01939 974 FunFam Aconitate hydratase 81 448 - -
Vivi5g01939 974 SUPERFAMILY Aconitase iron-sulfur domain 95 709 IPR036008 -
Vivi5g01939 974 Gene3D - 673 734 - -
Vivi5g01939 974 CDD AcnA_IRP_Swivel 750 920 IPR044137 -
Vivi5g01939 974 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 76 971 IPR006249 -
Vivi5g01939 974 MobiDBLite consensus disorder prediction 1 31 - -
Vivi5g01939 974 Gene3D Aconitase, domain 4 737 973 IPR015928 -
Vivi5g01939 974 ProSitePatterns Aconitase family signature 1. 509 525 IPR018136 -
Vivi5g01939 974 FunFam cytoplasmic aconitate hydratase 449 672 - -
Vivi5g01939 974 Pfam Aconitase C-terminal domain 773 900 IPR000573 -
Vivi5g01939 974 Gene3D Aconitase, domain 3 449 672 IPR015931 -
Vivi5g01939 974 CDD AcnA_IRP 162 646 - -
Vivi5g01939 974 NCBIfam aconitate hydratase AcnA 99 972 IPR006249 -
Vivi5g01939 974 PRINTS Aconitase family signature 575 588 IPR001030 -
Vivi5g01939 974 PRINTS Aconitase family signature 366 379 IPR001030 -
Vivi5g01939 974 PRINTS Aconitase family signature 448 462 IPR001030 -
Vivi5g01939 974 PRINTS Aconitase family signature 247 255 IPR001030 -
Vivi5g01939 974 PRINTS Aconitase family signature 513 524 IPR001030 -
Vivi5g01939 974 PRINTS Aconitase family signature 223 236 IPR001030 -
Vivi5g01939 974 PRINTS Aconitase family signature 352 365 IPR001030 -
Vivi5g01939 974 PRINTS Aconitase family signature 276 289 IPR001030 -
Vivi5g01939 974 PRINTS Aconitase family signature 290 305 IPR001030 -
Vivi5g01939 974 SUPERFAMILY LeuD/IlvD-like 713 972 - -
Vivi5g01939 974 FunFam Aconitate hydratase 736 973 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01939 Vivi-Chr5 74387201 74395391 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01939 K01681 - gmx:100778506 1768.82