Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01907 ATGGCGACACTCGATTCTGACGTGACGATGGTTCCCGCCGGCGAAGCCTCAAGCAGTGCCGCCGGCCCCTCTTCCAAGAAGCCGAAGCGATTCGAGATCAAAAAGTGGAACGCAGTATCTCTCTGGGCTTGGGATATCGTTGTTGATAACTGTGCTATATGCCGGAACCACATCATGGATCTCTGTATTGAGTGTCAAGCTAACCAGGCTAGCGCCACTAGCGAGGAGTGCACAGTTGCTTGGGGGGTGTGTAACCATGCTTTCCACTTCCATTGCATCAGTAGATGGCTCAAGACTCGTCAAGTGTGTCCTCTAGACAACAGTGAGTGGGAGTTTCAGAAATATGGCCACTAA 354 0.5169 MATLDSDVTMVPAGEASSSAAGPSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01907 117 CDD mRING-H2-C3H2C2D_RBX1 49 110 - -
Vivi5g01907 117 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 117 IPR013083 -
Vivi5g01907 117 FunFam E3 ubiquitin-protein ligase RBX1 17 117 - -
Vivi5g01907 117 ProSiteProfiles Zinc finger RING-type profile. 62 107 IPR001841 -
Vivi5g01907 117 PANTHER RING BOX 30 116 - -
Vivi5g01907 117 MobiDBLite consensus disorder prediction 1 28 - -
Vivi5g01907 117 Pfam RING-H2 zinc finger domain 49 107 IPR024766 GO:0008270
Vivi5g01907 117 SUPERFAMILY RING/U-box 29 114 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01907 K03868 - gmx:100789570 241.121