Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01797 ATGACTACCAACAATGTCTTCGAAGATTTGTTACCAATGATGGCCAACAAGCTAGGCGGTGAAGGTTTAATCAAAGAGCTATGCAACGGGTTTGACTTGCTGATGGACAAAGAAAAAGGCGTGATCACGTTGGATAGCTTGAGGAAAAACGCTGCGGTTTTGGGTCTTCAGGATATGAAAGAAGATGAACTTGTGAGCATGATGAAGGAAGGTGATATGGATAGAGATGGAGCACTGACGCAGATGGAGTTTTGTGTTTTGATGTTTAGGTTGAGTCCGGAATTGATGGAAGAGTCTTGGTTTTGGCTTGAGGAGGCACTGCAACATGAACTTGACAACAATAATAATTCTTTTTTGTAG 360 0.4194 MTTNNVFEDLLPMMANKLGGEGLIKELCNGFDLLMDKEKGVITLDSLRKNAAVLGLQDMKEDELVSMMKEGDMDRDGALTQMEFCVLMFRLSPELMEESWFWLEEALQHELDNNNNSFL 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01797 119 ProSitePatterns EF-hand calcium-binding domain. 72 84 IPR018247 -
Vivi5g01797 119 Gene3D - 5 119 - -
Vivi5g01797 119 ProSiteProfiles EF-hand calcium-binding domain profile. 59 94 IPR002048 GO:0005509
Vivi5g01797 119 PANTHER CALCIUM-BINDING PROTEIN KIC 2 113 IPR044205 GO:0005509
Vivi5g01797 119 SUPERFAMILY EF-hand 22 100 IPR011992 -
Vivi5g01797 119 Pfam EF-hand domain pair 38 90 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01797 Vivi-Chr5 65822960 65823693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01797 7 111 EF-hand Containing Proteins AT5G54490 64.151 9.24e-45 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01797 K24345 - gmx:100527206 204.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g01797 5 65822960 65823693 Vivi5g01797 5 65822960 65823693 ECH