Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01788 ATGTTTAAATTTTCTTGTTTTCATGTTAATGTCCAAGGCAACAAGACAAAGAAAATAACTCAACCTTCTACTGAAACAATGGCAAGAGTTTTGCGAGAAAGTTCCAAAATTCCAGTCAGGAAAGATCCGTCTACCCCTACGAACTTAGGTTCATTACTTTCAAAACAGCAATCAAGTAAGCTAATGAATGTCGCCGAGAATGATATTCTCAACCAGGATTCAGTTGAGCACGTTGGTAAGTTAGAGGATCTCAATAAGAAGTTTTGCGTTGAATTTGACGGAAAAGTTCGCCAAACTGAGCGTCTTAGGAAAAGTCAGTCGGAAAGTGTGCTTTGCCAAGTCATAACTGAGGGTGATCAAGTTCTGGAGTTTTCCAAAAGCCTCAATGACTCACCAAATTCAAGTGGCAGCCCTAGTGATGAATTTAAAACAAATTCAAACTCTGAGTTTCAAGTTATTCCTGGTCGTGACAATGATGGCTCAAGTTTTTCAGTTGGAGATCCGACACATTTGGATATGGATGCTCATGAAATTTCTGATACTCCATTATCTGGCGATCTTGCTGGCGATTCTGCTGAAAATACTTCTGGTCCCAGTTCACCAACTTTAAGGAAGTCGCATTCCTTACCCAATTTCAAAGCTCCTACACTTTCATATGGAAGTATTTGTGTTTTTAAACATGCATCATCAATGTCAAGATCTTCGGACGATCTTTGTGCTTTAGGCCTGAGGAACGTGTCTTCTGATCAAATAAGGAAAGGAAAAGAATGTAGCATGAAAAAAACTGAAGATTTTCGTATGGACAGATACTTTGAGGATAGTTTTGATTCTCATCTGCTTTCTCACTTACCAAAGGACCGGATAATGCCAATTACAGACGATATAAGTGATGTTGAACCCTTTCAAGGAGATTCCTCGGCTGAATTTCCTAACAAGGATTTTAAAGTTAAGCGGATTGAGGATTGGGTAATCGGTCTGCAGCAATGTGCACCACCTCTAGAGGATATAGCCGAATTGCCTGAACCTGTTGATCTTATAGCTGATGTTAACACCGCAATTGCCGCTACTCCTGTTGTGGACCATAAGATCTCCCCAGGAATGGAAGCTGCTAAAAGATATATTTCGTCTTTAACTGCCAATGCCTCTGCAGCTCAGCTGGCAAGTCATGGGTTGGTTGCGATCCCCTTTTTGAGTGCATTTGTGAGTTTGAAGGTGCTCAATTTATCTGGAAACGGGATCGTAAAGATAACTGCTGGTGCGCTTCCTCGAGGACTTCACACTTTGAACTTGTCAAAAAACAATATCTCCACTATAGAGGGCTTACGTGAACTTACTCGGCTTCGTGTCCTAGACCTCAGCTACAACCGTATACTAAGAATTGGACATGGTCTGGCATCTTGTTCTTCTCTAAAGGAGCTGTACCTGGCTGGAAACAAGATCGGTGAAGTTGAGGGTTTGCACCGCCTATTGAAAATAAGTATCTTGGATCTCCGCTTTAACAAGATTTCGACCGCTAAATGTCTTGGACAACTTGCAGCCAACTATAACTCTTTGCTAGCTATCAACTTGGAAGGGAACCCTTGCCAGAAAAACGTTGGAGATGAACAGATTAAGAAATACCTGCAAGGCCTTCTTCCTCATCTTGTCTACTACAATCGGCAGCCCTTCAAAGCGAACGGTTTGAAGGACAGTGCAGATCGTGCAGTTCGACTAGGAATGAGCTCACAACAGTTTGATCGCGGTCTTAGAGTGGATCGCAAAACTACAAGGAAGGTGCCATCATCTACTCGGAGGCCATCCTCCGGGTCCTCACCAAAACATTCCAAAGGAAAGCAGGGCCACCTCCCACCTATGGGGACAAAACCATCATCCCAAAGTCGCCATCATTTGGATTCTTTTGACAAAGCGTTGAGCTTGAAGTCACGGAACTTAATGCGCAAGAGTCGCAGCGAGGGAACTCTTGGAGCTTTCTAA 1974 0.4286 MFKFSCFHVNVQGNKTKKITQPSTETMARVLRESSKIPVRKDPSTPTNLGSLLSKQQSSKLMNVAENDILNQDSVEHVGKLEDLNKKFCVEFDGKVRQTERLRKSQSESVLCQVITEGDQVLEFSKSLNDSPNSSGSPSDEFKTNSNSEFQVIPGRDNDGSSFSVGDPTHLDMDAHEISDTPLSGDLAGDSAENTSGPSSPTLRKSHSLPNFKAPTLSYGSICVFKHASSMSRSSDDLCALGLRNVSSDQIRKGKECSMKKTEDFRMDRYFEDSFDSHLLSHLPKDRIMPITDDISDVEPFQGDSSAEFPNKDFKVKRIEDWVIGLQQCAPPLEDIAELPEPVDLIADVNTAIAATPVVDHKISPGMEAAKRYISSLTANASAAQLASHGLVAIPFLSAFVSLKVLNLSGNGIVKITAGALPRGLHTLNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKIGEVEGLHRLLKISILDLRFNKISTAKCLGQLAANYNSLLAINLEGNPCQKNVGDEQIKKYLQGLLPHLVYYNRQPFKANGLKDSADRAVRLGMSSQQFDRGLRVDRKTTRKVPSSTRRPSSGSSPKHSKGKQGHLPPMGTKPSSQSRHHLDSFDKALSLKSRNLMRKSRSEGTLGAF 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01788 657 ProSiteProfiles Leucine-rich repeat profile. 424 445 IPR001611 GO:0005515
Vivi5g01788 657 MobiDBLite consensus disorder prediction 125 165 - -
Vivi5g01788 657 FunFam Protein phosphatase 1 regulatory subunit pprA 361 542 - -
Vivi5g01788 657 Gene3D Ribonuclease Inhibitor 360 541 IPR032675 -
Vivi5g01788 657 SMART LRR_sd22_2 489 513 - -
Vivi5g01788 657 SMART LRR_sd22_2 444 466 - -
Vivi5g01788 657 SMART LRR_sd22_2 467 488 - -
Vivi5g01788 657 SMART LRR_sd22_2 422 443 - -
Vivi5g01788 657 ProSiteProfiles Leucine-rich repeat profile. 446 468 IPR001611 GO:0005515
Vivi5g01788 657 SMART LRR_typ_2 400 423 IPR003591 -
Vivi5g01788 657 SMART LRR_typ_2 444 467 IPR003591 -
Vivi5g01788 657 PANTHER NISCHARIN RELATED 224 613 - -
Vivi5g01788 657 SUPERFAMILY Outer arm dynein light chain 1 395 554 - -
Vivi5g01788 657 ProSiteProfiles Leucine-rich repeat profile. 469 490 IPR001611 GO:0005515
Vivi5g01788 657 MobiDBLite consensus disorder prediction 576 657 - -
Vivi5g01788 657 Pfam Leucine rich repeat 402 457 IPR001611 GO:0005515
Vivi5g01788 657 Pfam Leucine Rich repeat 466 481 IPR001611 GO:0005515
Vivi5g01788 657 MobiDBLite consensus disorder prediction 594 608 - -
Vivi5g01788 657 MobiDBLite consensus disorder prediction 188 209 - -
Vivi5g01788 657 MobiDBLite consensus disorder prediction 125 209 - -
Vivi5g01788 657 MobiDBLite consensus disorder prediction 627 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01788 Vivi-Chr5 64986567 64989885 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01788 - - lang:109355198 761.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g01788 5 64986567 64989885 Vivi5g01788 5 64986567 64989885 ECH