Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01737 ATGGCAACCCAAAACAACGACGGATCAGTGCTTGACCCGAACCCTGTTGTGGCGGAGATACTGGAACCGAAGCTTGAAAAGATTGATACTTTGGACGCTGAAATTCCGATTGAAAAAATTGTGGAAAAGATCACGTTAGCGGGTGACCTGAACCCTGTTGTGGCGGATACCCTGGAAGTGAAGCTTGAAAAGATTGACAATTTGGACGCTGAAATTCCGATTGAAAAAATTGTGGAAAATATCACGTTAGCGGGTGACCCGAATCTTGCTGTGGCGGGGACACTGGAACCGAAGCTTGAAAAGATCGACAATTGGGACGCTGAAATTCCTATTGAAAATATTGTGGAAAAGATCACGTTAGCGGGTGACCCGAACGCTGCTGTGGCGGAGACACTGGAACTGAAGCTTGAAAAGATTGATACTTTGGACGCTGAAATTCCTATTGAAAATATTGCGGAAAAGATCACGTTAGCGGGCGACCCTCTTTCAGTTGACGTGAACGAGAATGACAATAAGGATAACAATGATGACGAAGATGATAGCGAAAGCGAGAGTGACAGCGAAAGTTCAGAGTCTGAGAGTTCTTCTTCAGCATCATCATCATCATCTAGTTCTGATTCTGATAGTGATGAAGATGGGGAAATAAAGGATTCTGATGATGAAGATGGGGAGATAAAGGATTCTGATGATGAAGAGATGGTTAGTTGGAGTGAAGCTGAAGCTGATTTTGATGTTGATGATGAAGATGAAGTTGTTGTAGGACCAATTTGGTCAACGAATGAGATTCAGAATTTGCCTCCAGTTCCTACTGTGGACGTGACTTTGGAACCACACCATAAAATGCAACCTGTTGGAGTTGTTATGTCGACTCTTGGTCCTAAAGTCGTTGTCGAAGGAGTGGAGAAGCATGAACCTCTTAACGAGGGTTCCATTCTCTGGCTGACTGAAAGCCGCAAACCATTAGGTTTAGTTGATGAAATCTTTGGACCAGTCAAAAACCCATATTATGTTGTGAGATACAATTCTGAAAATGATATCCCTGCGGGGATCCAAGGGGGAACAACTTTGGTCTCATGTGTTCCCGAATTTGCTGACCGTGTGCTTAATCATAAGGATCTTTATAGGAAAGGCTATGATGCATCTGGTCCAAATGATGAAGAGTTGTCTGATGAAGTAGAGTTTTCAGATGATGAGAAAGAAGCTGAATACAGGAAAATGCGGAAAATGACAAAGAGAGGGAATAGTGATCAAAATCCTGGCAAGAATGGCAAGAAAAGAAACAACAAAAGTAAGTTTTCACTGAAAGAGATGGTGCTACCTACTCCCCCTAAGACATCTGCAGCAGCACAGCGTGTGTTACATACTGCCCCTAATGCACCTGCAGTAGCACCATTGGTTAATCATGGAAACCATTCTTCATTTTTAGGCACTGGACAAGGTGGAACTACTGCAGTTTCTCCATTTCAACCTTTAAATGCAGGTCCTAATTTTGCTGCAAATGCAATGTGGCCAAATCAGACAACATTTCTACAGCAGTCACAGCTTTCCCTGCTTCCGAATGCATTTCCTACAAATGTCGGGTCATATTATCCACAAAATACACAATTTTCTCATCAGTTTCCTGTGCCAGGAGGTCCATTTCAACAGCAACTGAATCCCAGCTACGGAACTCACTTCCCAACTATGATGCCTGGGTTGCAGCCCAATATATATCCACAACAGCCCAATATATATCCACAACAACCCGTGCATGCACCGGGGTTTGTGGGTCAAAACCAAATGCCATTTGGTTTGAGCTCCCCCTTCCAACCAAATCAACCATCGCCTATCTTTCAAGCACAACAAGGTTCCTTCCAACAGAACCAGCCACCACCTGGTTTCTCACCCACTGAATTACAGCCATCGCCTAGTTCTATTTCTGGCAACCCCTCTCCATTTCATCCCGGTTCATCAGCTAGTCAAGGGAGACCAACATTCCGTGCTGCAGGAAGGAAAGGGTGGCGGCCTGCCAGGTGA 2016 0.4435 MATQNNDGSVLDPNPVVAEILEPKLEKIDTLDAEIPIEKIVEKITLAGDLNPVVADTLEVKLEKIDNLDAEIPIEKIVENITLAGDPNLAVAGTLEPKLEKIDNWDAEIPIENIVEKITLAGDPNAAVAETLELKLEKIDTLDAEIPIENIAEKITLAGDPLSVDVNENDNKDNNDDEDDSESESDSESSESESSSSASSSSSSSDSDSDEDGEIKDSDDEDGEIKDSDDEEMVSWSEAEADFDVDDEDEVVVGPIWSTNEIQNLPPVPTVDVTLEPHHKMQPVGVVMSTLGPKVVVEGVEKHEPLNEGSILWLTESRKPLGLVDEIFGPVKNPYYVVRYNSENDIPAGIQGGTTLVSCVPEFADRVLNHKDLYRKGYDASGPNDEELSDEVEFSDDEKEAEYRKMRKMTKRGNSDQNPGKNGKKRNNKSKFSLKEMVLPTPPKTSAAAQRVLHTAPNAPAVAPLVNHGNHSSFLGTGQGGTTAVSPFQPLNAGPNFAANAMWPNQTTFLQQSQLSLLPNAFPTNVGSYYPQNTQFSHQFPVPGGPFQQQLNPSYGTHFPTMMPGLQPNIYPQQPNIYPQQPVHAPGFVGQNQMPFGLSSPFQPNQPSPIFQAQQGSFQQNQPPPGFSPTELQPSPSSISGNPSPFHPGSSASQGRPTFRAAGRKGWRPAR 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01737 671 MobiDBLite consensus disorder prediction 207 246 - -
Vivi5g01737 671 MobiDBLite consensus disorder prediction 190 206 - -
Vivi5g01737 671 MobiDBLite consensus disorder prediction 582 671 - -
Vivi5g01737 671 Pfam Gar1/Naf1 RNA binding region 282 348 IPR007504 GO:0001522|GO:0042254
Vivi5g01737 671 MobiDBLite consensus disorder prediction 593 657 - -
Vivi5g01737 671 FunFam H/ACA ribonucleoprotein complex non-core subunit NAF1 253 359 - -
Vivi5g01737 671 MobiDBLite consensus disorder prediction 398 423 - -
Vivi5g01737 671 SUPERFAMILY Translation proteins 281 344 IPR009000 -
Vivi5g01737 671 MobiDBLite consensus disorder prediction 162 246 - -
Vivi5g01737 671 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1 123 627 IPR040309 GO:0000493|GO:0003723|GO:0005732|GO:0042254
Vivi5g01737 671 MobiDBLite consensus disorder prediction 171 189 - -
Vivi5g01737 671 Gene3D Probable tRNA pseudouridine synthase domain 253 357 IPR038664 -
Vivi5g01737 671 MobiDBLite consensus disorder prediction 375 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01737 Vivi-Chr5 61948407 61951803 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01737 K14763 - gmx:102661630 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g01737 5 61948407 61951803 Vivi5g01737 5 61948407 61951803 ECH