Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi5g01666 | ATGGCTGTTGAGGCTTCTGATAAACCAAACTTGCCCAAAAAATTTGACGATGACAGCGGTGATGATCAACCGTTATCTTTTAAAAGACACGCCAACAAGAGTCCATTGCATTCTCAAGACAGTGATGATGATCAACCATTATCTTTATCTTTTAAAAGACACGCCAACAAGAGTCCATTGCATTCTCAAGTAAAGAAAACAACTTATAGACAGATAACTGACGTGCCTTCTTCCAATGCCCAAAATTCTAAGCCTGTCAACACCTCCTACTACAAGTCACCCGTAGCAAAGCCTCTTCTGGGACAGAAAGTAACTCTTGATGTTAAGAAACAAACAAAACCTGTTCAACACCCTACAGAAGGTTATTGTGAAGATTTCGAGGATGACGACGATGATGGTAAACCATTGAGTTCTACGATGAAGATAAAATCTAATCATGGTAACAAAGTAGTAGCTCCGGTAGTTAACAAGAAATATTCTCAAGACTCTGACTCAAATGATGATGATAAGCCTATTTCAAAAGTTCATAAACAGCGGCAAAATGGTTTTAGCACAAGTAATGAACAGCTAAAGCCATCTACACTACCAGTTAAGAGAGAACTCGAAAATTGTGATGCCCCACACTCTTCGGCTAAAAAGTCAAAGATCTCAGATTCAACCGCTTTAATAAAAAAAACTAAACAAGTCTCTGTTAAGTGTGAAATTAAAGCTGAGGAAGAAGAAGATGATGATGATCTTCCTATTTCCCATAGATTTAACAAGTCACCAACATTAGCTGATAAACCATCTTCCACAAGCAAGATATTGGCAAAGGTTACTAAAGTTAATAAGTCAGGTTCAACATCTTTTAAGAAACAGATCAAGAACAAACAGACCAAGAACAAGTCAAAAAAATCCAGCAGTGGCTCAGAATATTCCAAATCATCGAAACTTCTTCCTAGCTCTGGTGATGGGCAGAAAAAATGGACTACGTTAATTCATAATGGTGTCATTTTCCCTCCTCCTTACAAGCCCCATGGGGTAAAAATGCTTTATATGGGGAGGCCTGTTGATTTGACTCCTGAGCAAGAGGAGGTTGCTACAATGTATGCGGTTATGCGAGATACAGATTACATGCAAAAAGATAGGTTCAAGGAAAATTTCTGGACTGATTGGCATAAGTTGCTAGGAAAAAATCATGTAATTCAAAGCTTGAAAGATTGTGACTTTACCCCAATCTATGAGTGGTGCCAAAGTGAAAAGGAAAAGAAGAAACAGATGACTACAGAAGAGAGGAAAGCTCTGAAGGAAGAAAAATTGAAGCAAGAGGAGAAATACACGTGGGCTATTGTCGACGGTGTTAAAGAGAAGGTTGGAAATTTCAGAGTTGAACCTCCTGGATTGTTTCGTGGCCGAGGAGAGCATCCCAAGATGGGAAGATTAAAAAAACGCATTCGTCCAAGTGATATTGTAATTAATATTGGAAGTGATGCACCAGTTCCTGAATGTCCTATTCCTGGTGAAGGATGGAAGGATATAAGAAATGACAATACAGTTACATGGTTATGCTATTGGAGTGACCCAATTAGTCCAAGGTTATTCAAGTATGTGTTTCTGGCAGCTAGTAGTTCCTTGAAGGGTCAAAGTGACAAGGAAAAGTATGAGAAGGCTAGGATGTTGAAGGATTATATAGGGAACATCAGGGCTTCATACACGAAAGATTTTACGAGTAAGGATATTACAAAGCAGCAGATAGCTGTTGCTACTTATCTCATTGATAAACTGGCTCTGAGGGCTGGTAATGAGAAGGATGAAGATGAAGCAGACACTGTCGGCTGCTGCACATTAAAAGTTGAGAATGTGACAAGCGAAGCCCCCAACAAATTGAAGTTTAACTTCCTTGGTAAAGATTCGATCAAGTATGAAAATACAGTTGAGGTTGAGCTTCCTGTTTATGATGCAATTTTGAAGTTCCAAAAAGATCGAGACCCTGGTAAAGATCTCTTTGATAAGCTGGATACACATAAATTGAATGCTCATCTGAAAGAGCTCATGCCTGGCTTAACAGCAAAAGTTTTCCGCACATTCAATGCATCTATCACATTGGATGATAAGTTGAATAAAGACACTAAAGATGGAGATGCTGCAGAAAAGATTGTTGTTTATCAGCATGCCAATAAACAGGTTGCAATCATCTGTAATCATCAACGGAGTGTTTCAAAATCTCACAGTGCACAAATGACTAAACTAAATGAGAAAATTGATGAACTTCAGGATGTTCTGAAGGAGCTGAAAGTAGATTTGGACAGGGCAAGAAAAGGAAAGTCCCCTACAAAGAGTTCAGATGGAAAAAGCAAACGAAGCTTAACTCCCGAAGTGCTAGAGAAAAAGATATCTCAAACCAATGCAAAAATTCAGAAAATGCAACGTGATATGAAGACAAAAGAAGATCTTAAAACTATAGCATTGGGCACATCCAAGATAAACTATCTCGACCCCAGGATTACAGTTGCCTGGTGCAAGCGGCATGAGGTTCCCATTGAGAAGCTTTTCACAAAATCTCTGCTGGCAAAATTTGCTTGGGCAATGAATGTGGACCCAGATTTCAGATTCTGA | 2595 | 0.3896 | MAVEASDKPNLPKKFDDDSGDDQPLSFKRHANKSPLHSQDSDDDQPLSLSFKRHANKSPLHSQVKKTTYRQITDVPSSNAQNSKPVNTSYYKSPVAKPLLGQKVTLDVKKQTKPVQHPTEGYCEDFEDDDDDGKPLSSTMKIKSNHGNKVVAPVVNKKYSQDSDSNDDDKPISKVHKQRQNGFSTSNEQLKPSTLPVKRELENCDAPHSSAKKSKISDSTALIKKTKQVSVKCEIKAEEEEDDDDLPISHRFNKSPTLADKPSSTSKILAKVTKVNKSGSTSFKKQIKNKQTKNKSKKSSSGSEYSKSSKLLPSSGDGQKKWTTLIHNGVIFPPPYKPHGVKMLYMGRPVDLTPEQEEVATMYAVMRDTDYMQKDRFKENFWTDWHKLLGKNHVIQSLKDCDFTPIYEWCQSEKEKKKQMTTEERKALKEEKLKQEEKYTWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGRLKKRIRPSDIVINIGSDAPVPECPIPGEGWKDIRNDNTVTWLCYWSDPISPRLFKYVFLAASSSLKGQSDKEKYEKARMLKDYIGNIRASYTKDFTSKDITKQQIAVATYLIDKLALRAGNEKDEDEADTVGCCTLKVENVTSEAPNKLKFNFLGKDSIKYENTVEVELPVYDAILKFQKDRDPGKDLFDKLDTHKLNAHLKELMPGLTAKVFRTFNASITLDDKLNKDTKDGDAAEKIVVYQHANKQVAIICNHQRSVSKSHSAQMTKLNEKIDELQDVLKELKVDLDRARKGKSPTKSSDGKSKRSLTPEVLEKKISQTNAKIQKMQRDMKTKEDLKTIALGTSKINYLDPRITVAWCKRHEVPIEKLFTKSLLAKFAWAMNVDPDFRF | 864 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi5g01666 | 864 | Pfam | C-terminal topoisomerase domain | 796 | 864 | IPR025834 | - | |
| Vivi5g01666 | 864 | Gene3D | - | 337 | 420 | IPR013034 | GO:0003917|GO:0006265 | |
| Vivi5g01666 | 864 | MobiDBLite | consensus disorder prediction | 296 | 316 | - | - | |
| Vivi5g01666 | 864 | MobiDBLite | consensus disorder prediction | 279 | 316 | - | - | |
| Vivi5g01666 | 864 | MobiDBLite | consensus disorder prediction | 51 | 90 | - | - | |
| Vivi5g01666 | 864 | MobiDBLite | consensus disorder prediction | 1 | 265 | - | - | |
| Vivi5g01666 | 864 | PANTHER | DNA TOPOISOMERASE I | 156 | 864 | - | - | |
| Vivi5g01666 | 864 | Pfam | Eukaryotic DNA topoisomerase I, DNA binding fragment | 321 | 532 | IPR008336 | GO:0003677|GO:0003917|GO:0006265 | |
| Vivi5g01666 | 864 | FunFam | DNA topoisomerase I | 336 | 420 | - | - | |
| Vivi5g01666 | 864 | Gene3D | - | 684 | 864 | IPR014727 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Vivi5g01666 | 864 | SUPERFAMILY | Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment | 316 | 533 | IPR036202 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Vivi5g01666 | 864 | MobiDBLite | consensus disorder prediction | 9 | 50 | - | - | |
| Vivi5g01666 | 864 | FunFam | DNA topoisomerase I | 684 | 864 | - | - | |
| Vivi5g01666 | 864 | PRINTS | Eukaryotic DNA topoisomerase I signature | 577 | 596 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Vivi5g01666 | 864 | PRINTS | Eukaryotic DNA topoisomerase I signature | 680 | 694 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Vivi5g01666 | 864 | PRINTS | Eukaryotic DNA topoisomerase I signature | 817 | 828 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Vivi5g01666 | 864 | PRINTS | Eukaryotic DNA topoisomerase I signature | 461 | 470 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Vivi5g01666 | 864 | PRINTS | Eukaryotic DNA topoisomerase I signature | 600 | 614 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Vivi5g01666 | 864 | PRINTS | Eukaryotic DNA topoisomerase I signature | 622 | 638 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Vivi5g01666 | 864 | SMART | topeu | 461 | 837 | IPR013499 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Vivi5g01666 | 864 | Gene3D | DNA Topoisomerase I, domain 2 | 317 | 532 | IPR013030 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Vivi5g01666 | 864 | Pfam | Eukaryotic DNA topoisomerase I, catalytic core | 535 | 759 | IPR013500 | GO:0003677|GO:0003917|GO:0006265 | |
| Vivi5g01666 | 864 | ProSitePatterns | Eukaryotic DNA topoisomerase I active site. | 810 | 828 | IPR018521 | GO:0003677|GO:0003917|GO:0006265 | |
| Vivi5g01666 | 864 | FunFam | DNA topoisomerase I | 535 | 683 | - | - | |
| Vivi5g01666 | 864 | CDD | Topoisomer_IB_N | 321 | 533 | - | - | |
| Vivi5g01666 | 864 | MobiDBLite | consensus disorder prediction | 177 | 193 | - | - | |
| Vivi5g01666 | 864 | Gene3D | Topoisomerase I; Chain A, domain 3 | 535 | 683 | IPR014711 | GO:0003677|GO:0003917|GO:0006265 | |
| Vivi5g01666 | 864 | SUPERFAMILY | DNA breaking-rejoining enzymes | 535 | 861 | IPR011010 | GO:0003677 | |
| Vivi5g01666 | 864 | MobiDBLite | consensus disorder prediction | 764 | 786 | - | - | |
| Vivi5g01666 | 864 | Coils | Coil | 791 | 811 | - | - | |
| Vivi5g01666 | 864 | FunFam | DNA topoisomerase I | 408 | 532 | - | - | |
| Vivi5g01666 | 864 | CDD | Topo_IB_C | 541 | 734 | IPR013500 | GO:0003677|GO:0003917|GO:0006265 | |
| Vivi5g01666 | 864 | Coils | Coil | 411 | 438 | - | - | |
| Vivi5g01666 | 864 | MobiDBLite | consensus disorder prediction | 161 | 176 | - | - | |
| Vivi5g01666 | 864 | Coils | Coil | 733 | 767 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vivi5g01666 | Vivi-Chr5 | 56556925 | 56565843 | Dispersed/Tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi5g01666 | K03163 | - | gmx:100799837 | 1184.09 |